# frozen_string_literal: true module Hanny # LSHIndex is a class that builds a search index with Locality Sensitive Hashing (LSH) [1]. # It is known that if the code length is sufficiently long (ex. greater than 128-bit), # LSH can obtain higher search performance than many popular hashing methods [2]. # In search process, LSHIndex obtains search results by sorting the data stored in hash table with Hamming distances # between query binary code and binary hash keys. # # @example # # Prepare vector data for search targets and queries with Numo::DFloat (shape: [n_samples, n_features]). # targets = Numo::DFloat.new(5000, 512).rand # queries = Numo::DFloat.new(10, 512).rand # # # Build a search index with 256-bit binary code via LSH. # # Although LSHIndex works without setting random_seed, it recommends setting random_seed for reproducibility. # index = Hanny::LSHIndex.new(code_length: 256, random_seed: 1) # index.build_index(targets) # # # Obtain the Array that has the data indices of 10-neighbors for each query. # candidates = index.search_knn(queries, n_neighbors: 10) # # # Save and load the search index with Marshal. # File.open('index.dat', 'wb') { |f| f.write(Marshal.dump(index)) } # index = Marshal.load(File.binread('index.dat')) # # *References:* # 1. Moses S. Charikar, "Similarity Estimation Techniques from Rounding Algorithms," Proc. of the 34-th Annual ACM Symposium on Theory of Computing, pp. 380--388, (2002). # 1. Deng Cai, "A Revisit of Hashing Algorithms for Approximate Nearest Neighbor Search," CoRR abs/1612.07545 (2016). class LSHIndex # Return the code length of hash key. # @return [Integer] attr_reader :code_length # Return the number of samples of indexed data. # @return [Integer] attr_reader :n_samples # Return the number of features of indexed data. # @return [Integer] attr_reader :n_features # Return the number of hash keys. # @return [Integer] attr_reader :n_keys # Return the hash table. # @return [Hash] attr_reader :hash_table # Return the binary hash codes. # @return [Numo::Bit] attr_reader :hash_codes # Return the seed to initialize random number generator. # @return [Integer] attr_reader :random_seed # Return the random generator to generate random matrix. # @return [Random] attr_reader :rng # Create a new nearest neighbor index. # @param code_length [Integer] The length of binary code for hash key. # @param random_seed [Integer/NilClass] The seed value using to initialize the random generator. def initialize(code_length: 256, random_seed: nil) @code_length = code_length @n_samples = nil @n_features = nil @n_keys = nil @last_id = nil @weight_mat = nil @hash_table = nil @hash_codes = nil @random_seed = random_seed @random_seed ||= srand @rng = Random.new(@random_seed) end # Convert data into binary codes. # @param x [Numo::DFloat] (shape: [n_samples, n_features]) The data to be converted to binary codes. # @return [Numo::Bit] The binary codes converted from given data. def hash_function(x) x.dot(@weight_mat).ge(0.0) end # Build a search index. # @param x [Numo::DFloat] (shape: [n_samples, n_features]) The dataset for building search index. # @return [SVC] The search index itself that has constructed the hash table. def build_index(x) # Initialize some variables. @n_samples, @n_features = x.shape @hash_table = {} @hash_codes = [] @weight_mat = Utils.rand_normal([@n_features, @code_length], @rng) # Convert samples to binary codes. bin_x = hash_function(x) # Store samples to binary hash table. @n_samples.times do |m| bin_code = bin_x[m, true] hash_key = symbolized_hash_key(bin_code) unless @hash_table.key?(hash_key) @hash_codes.push(bin_code.to_a) @hash_table[hash_key] = [] end @hash_table[hash_key].push(m) end @hash_codes = Numo::Bit.cast(@hash_codes) # Update some variables. @n_keys = @hash_codes.shape[0] @last_id = @n_samples self end # Append new data to the search index. # @param x [Numo::DFloat] (shape: [n_samples, n_features]) The dataset to append to search index. # @return [Array] The indices of appended data in search index def append_data(x) # Initialize some variables. n_new_samples, = x.shape bin_x = hash_function(x) added_data_ids = [] # Store samples to binary hash table. new_codes = [] n_new_samples.times do |m| bin_code = bin_x[m, true] hash_key = symbolized_hash_key(bin_code) unless @hash_table.key?(hash_key) new_codes.push(bin_code.to_a) @hash_table[hash_key] = [] end new_data_id = @last_id + m @hash_table[hash_key].push(new_data_id) added_data_ids.push(new_data_id) end # Update hash codes. unless new_codes.empty? new_codes = Numo::Bit.cast(new_codes) @hash_codes = @hash_codes.concatenate(new_codes) @n_keys = @hash_codes.shape[0] end @last_id += n_new_samples @n_samples += n_new_samples added_data_ids end # Remove data from the search index. # The indices of removed data will never be assigned unless the search index is rebuilt. # @param data_ids [Array] The data indices to be removed. # @return [Array] The indices of removed data in search index def remove_data(data_ids) removed_data_ids = [] data_ids.each do |query_id| # Remove data id from hash table. hash_key = @hash_table.keys.select { |k| @hash_table[k].include?(query_id) }.first next if hash_key.nil? @hash_table[hash_key].delete(query_id) removed_data_ids.push(query_id) # Remove the hash key if there is no data. next unless @hash_table[hash_key].empty? target_id = distances_to_hash_codes(decoded_hash_key(hash_key)).index(0) @hash_codes = @hash_codes.delete(target_id, 0) end @n_samples -= removed_data_ids.size removed_data_ids end # Perform k-nearest neighbor search. # @param q [Numo::DFloat] (shape: [n_queries, n_features]) The data for search queries. # @param n_neighbors [Integer] The number of neighbors. # @return [Array] The data indices of search result. def search_knn(q, n_neighbors: 10) # Initialize some variables. n_queries, = q.shape candidates = Array.new(n_queries) { [] } # Binarize queries. bin_q = hash_function(q) # Find k-nearest neighbors for each query. n_queries.times do |m| sort_with_index(distances_to_hash_codes(bin_q[m, true])).each do |_, n| candidates[m] = candidates[m] | @hash_table[symbolized_hash_key(@hash_codes[n, true])] break if candidates[m].size >= n_neighbors end candidates[m] = candidates[m].shift(n_neighbors) end candidates end # Perform hamming radius nearest neighbor search. # @param q [Numo::DFloat] (shape: [n_queries, n_features]) The data for search queries. # @param radius [Float] The hamming radius for search range. # @return [Array] The data indices of search result. def search_radius(q, radius: 1) # Initialize some variables. n_queries, = q.shape candidates = Array.new(n_queries) { [] } # Binarize queries. bin_q = hash_function(q) # Find k-nearest neighbors for each query. n_queries.times do |m| sort_with_index(distances_to_hash_codes(bin_q[m, true])).each do |d, n| break if d > radius candidates[m] = candidates[m] | @hash_table[symbolized_hash_key(@hash_codes[n, true])] end end candidates end # Dump marshal data. # @return [Hash] The marshal data for search index. def marshal_dump { code_length: @code_length, n_samples: @n_samples, n_features: @n_features, n_keys: @n_keys, last_id: @last_id, weight_mat: @weight_mat, bias_vec: @bias_vec, hash_table: @hash_table, hash_codes: @hash_codes, random_seed: @random_seed, rng: @rng } end # Load marshal data. # @return [nil] def marshal_load(obj) @code_length = obj[:code_length] @n_samples = obj[:n_samples] @n_features = obj[:n_features] @n_keys = obj[:n_keys] @last_id = obj[:last_id] @weight_mat = obj[:weight_mat] @bias_vec = obj[:bias_vec] @hash_table = obj[:hash_table] @hash_codes = obj[:hash_codes] @random_seed = obj[:random_seed] @rng = obj[:rng] nil end private # Convert binary code to symbol as hash key. # @param bin_code [Numo::Bit] # @return [Symbol] def symbolized_hash_key(bin_code) Zlib::Deflate.deflate(bin_code.to_a.join, Zlib::BEST_SPEED).to_sym end # Calculate hamming distances between binary code and binary hash keys. # @param bin_code [Numo::Bit] # @return [Array] def distances_to_hash_codes(bin_code) (bin_code ^ @hash_codes).count(1).to_a end # Sort array elements with indices. # @param arr [Array] # @return [Array] def sort_with_index(arr) arr.map.with_index.sort_by(&:first) end # Convert hash key symbol to binary code. # @param hash_key [Symbol] # @return [Numo::Bit] def decoded_hash_key(hash_key) bin_code = Zlib::Inflate.inflate(hash_key.to_s).split('').map(&:to_i) Numo::Bit[*bin_code] end end end