Sha256: 53b83e829deeb458bc9543f3aaee0037e6dfcf845035cbbe183e4ea34b7f337b
Contents?: true
Size: 646 Bytes
Versions: 2
Compression:
Stored size: 646 Bytes
Contents
require 'forwardable' require 'tempfile' module NpSearch # A class to hold sequence data class Signalp class << self extend Forwardable def_delegators NpSearch, :opt def analyse_sequence(seq) sp_headers = %w(name cmax cmax_pos ymax ymax_pos smax smax_pos smean d sp dmaxcut networks) f = Tempfile.new('signalp') f.write(">seq\n#{seq}") f.close s = `#{opt[:signalp_path]} -t euk -f short -U 0.3 -u 0.3 '#{f.path}' | \ sed -n '3 p'` Hash[sp_headers.map(&:to_sym).zip(s.split)] ensure f.unlink end end end end
Version data entries
2 entries across 2 versions & 1 rubygems
Version | Path |
---|---|
npsearch-2.0.1 | lib/npsearch/signalp.rb |
npsearch-2.0.0 | lib/npsearch/signalp.rb |