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Contents
#
# bio/util/restriction_enzyme/double_stranded/cut_location_pair_in_enzyme_notation.rb - Inherits from DoubleStranded::CutLocationPair
#
# Author:: Trevor Wennblom <mailto:trevor@corevx.com>
# Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
# License:: The Ruby License
#
module Bio
require 'bio/util/restriction_enzyme' unless const_defined?(:RestrictionEnzyme)
class RestrictionEnzyme
class DoubleStranded
# Inherits from DoubleStranded::CutLocationPair , stores the cut location pair in
# enzyme notation instead of 0-based.
#
class CutLocationPairInEnzymeNotation < CutLocationPair
#########
protected
#########
def validate_2( a, b )
if (a == 0) or (b == 0)
raise ArgumentError, "Enzyme index notation only. 0 values are illegal."
end
if a == nil and b == nil
raise ArgumentError, "Neither strand has a cut. Ambiguous."
end
end
end # CutLocationPair
end # DoubleStranded
end # RestrictionEnzyme
end # Bio
Version data entries
12 entries across 12 versions & 1 rubygems