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.\" generated with Ronn/v0.7.3 .\" http://github.com/rtomayko/ronn/tree/0.7.3 . .TH "MAF_TO_FASTA" "1" "August 2012" "BioRuby" "BioRuby Manual" . .SH "NAME" \fBmaf_to_fasta\fR \- convert MAF file to FASTA . .SH "SYNOPSIS" \fBmaf_to_fasta\fR [\fIoptions\fR\.\.\.] \fImaf\fR \fIfasta\fR . .SH "DESCRIPTION" \fBmaf_to_fasta\fR, part of the bioruby\-maf library, converts Multiple Alignment Format (MAF) files to FASTA format\. It does not attempt to combine alignment blocks, but simply writes out each sequence in order\. . .SH "FILES" The \fImaf\fR input file must be a valid MAF file of any length\. . .P The \fIfasta\fR output file will be written in FASTA format\. . .SH "OPTIONS" The options are only useful for performance measurement\. . .SH "EXAMPLES" Convert a MAF file to FASTA: . .IP "" 4 . .nf $ maf_to_fasta chrY\.maf chrY\.fa . .fi . .IP "" 0 . .SH "ENVIRONMENT" \fBmaf_to_fasta\fR is a Ruby program and relies on ordinary Ruby environment variables\. . .SH "BUGS" \fBmaf_to_fasta\fR should provide flexibility in selecting the alignment blocks and sequences to convert, and perhaps allow alignment blocks to be spliced together\. . .SH "COPYRIGHT" \fBmaf_to_fasta\fR is copyright (C) 2012 Clayton Wheeler\. . .SH "SEE ALSO" ruby(1) . .IP "\(bu" 4 \fIhttps://github\.com/csw/bioruby\-maf/\fR . .IP "" 0
Version data entries
4 entries across 4 versions & 1 rubygems
Version | Path |
---|---|
bio-maf-1.0.1-java | man/maf_to_fasta.1 |
bio-maf-1.0.1 | man/maf_to_fasta.1 |
bio-maf-1.0.0-java | man/maf_to_fasta.1 |
bio-maf-1.0.0 | man/maf_to_fasta.1 |