Sha256: 4e07f65699147f5fb12ff85ee1a2905205848ffd403f5f02cf411c342655e79f
Contents?: true
Size: 1018 Bytes
Versions: 27
Compression:
Stored size: 1018 Bytes
Contents
require 'rbbt'
require 'rbbt/resource'
require 'rbbt/tsv'
module PSI_MI
extend Resource
self.subdir = Rbbt.share.databases.PSI_MI
URL="http://psidev.cvs.sourceforge.net/viewvc/psidev/psi/mi/rel25/data/psi-mi25.obo"
PSI_MI.claim PSI_MI.identifiers, :proc do
tsv = TSV.setup({}, :type => :list, :key_field => "PSI-MI Term", :fields => ["Name", "Description"])
Open.open(URL).read.split("[Term]").each do |chunk|
id = chunk.scan(/id: ([^\n]*)/)[0]
name = chunk.scan(/name: ([^\n]*)/)[0]
description = chunk.scan(/def: "([^\n]*)"/)[0]
tsv[id] = [name, description]
end
tsv.to_s
end
end
if defined? Entity
require 'rbbt/entity/gene'
require 'rbbt/entity/interactor'
require 'rbbt/sources/PSI_MI'
module PSI_MITerm
extend Entity
self.format = "PSI-MI Term"
property :name => :array2single do
@@index ||= PSI_MI.identifiers.tsv(:persist => true, :fields => ["Name"], :type => :single)
@@index.values_at(*self)
end
end
end
Version data entries
27 entries across 27 versions & 1 rubygems