Contents

source "http://rubygems.org"
# Add dependencies required to use your gem here.
# Example:
#   gem "activesupport", ">= 2.3.5"
gem 'bio-ipcress', '~>0.0'
gem 'bio-logger', '~>1.0'
gem 'bio', '~>1.4', '>=1.4.3'
gem 'progressbar', '~>0.21'
#gem 'bio-samtools', '~>2.4' # removed because even the newest version does not compile due to lacking zlib.h
gem 'ruby-graphviz', '~>1.0', '>=1.0.9'
gem 'ds', '~>0.0', '>=0.0.4'
gem 'hopcsv', '~> 0.4', '>=0.4.3'
gem 'bio-velvet', '~>0.6'
gem 'bio-velvet_underground', '~>0.3'
gem 'ruby-progressbar', '~>1.4', '>=1.4.2'
gem 'yargraph', '~>0.0', '>=0.0.4'

# Really only needed for debug but there is the --debug modes in e.g. roundup
# so keeping it in here
gem 'pry', '~>0.10'

# Add dependencies to develop your gem here.
# Include everything needed to run rake, tests, features, etc.
group :development do
  gem "rspec", '~>2.8', ">= 2.8.0"
  gem "yard", "~>0.7"
  gem "rdoc", "~>3.12"
  gem "bundler", "~>1.6", '>=1.6.2'
  gem 'jeweler', '~>2.0', '>=2.1.1'
  gem 'bio-commandeer', '~>0.1'
end

Version data entries

2 entries across 2 versions & 1 rubygems

Version	Path
finishm-0.0.9	Gemfile
finishm-0.0.8	Gemfile