Sha256: 49289e4dc65438cdfc36c7827cd8c9ce6d60eda84f8e6dbc63723d03c876816a
Contents?: true
Size: 499 Bytes
Versions: 9
Compression:
Stored size: 499 Bytes
Contents
Given /^indexed MAF files in "(.*?)"$/ do |dir|
@opts ||= {}
@access = Bio::MAF::Access.maf_dir(dir, @opts)
end
When /^I query for the genomic intervals$/ do |table|
# table is a Cucumber::Ast::Table
intervals = table.hashes.collect do |row|
Bio::GenomicInterval.zero_based(row['chrom'],
row['start'].to_i,
row['end'].to_i)
end
@access.block_filter = @block_filter
@blocks = @access.find(intervals).to_a
end
Version data entries
9 entries across 9 versions & 1 rubygems