Sha256: 472518b3bf317b8a9c21ea2f84020c11c3ccee003e4e6678e4fbd4236ffe19f9
Contents?: true
Size: 1.53 KB
Versions: 50
Compression:
Stored size: 1.53 KB
Contents
#!/usr/bin/env ruby
require 'rbbt-util'
require 'rbbt/util/simpleopt'
$0 = "rbbt #{$previous_commands*" "} #{ File.basename(__FILE__) }" if $previous_commands
options = SOPT.setup <<EOF
View TSV nicer
$ #{$0} [options] <filename.tsv|->
Use - to read from STDIN
-h--help Print this help
EOF
if options[:help]
if defined? rbbt_usage
rbbt_usage
else
puts SOPT.doc
end
exit 0
end
file = ARGV.shift
file = STDIN if file == '-' || file.nil?
case
when options[:tokyocabinet]
tsv = Persist.open_tokyocabinet(file, false)
when options[:tokyocabinet_bd]
tsv = Persist.open_tokyocabinet(file, false, nil, TokyoCabinet::BDB)
else
if String === file
file = file.dup
file = Path.setup(File.expand_path(file))
end
tsv = file
end
tsv = TSV.open(tsv) if IO === tsv || Path === tsv
begin
require 'rbbt/workflow'
Workflow.require_workflow "Genomics"
tsv = Genomics.job(:names, nil, :tsv => tsv).run
rescue
end
puts [Log.highlight(Log.color(:magenta, tsv.key_field)), Log.color(:yellow, tsv.fields * "\t")] * "\t"
TSV.traverse tsv do |k,values,fields|
fvalues = values.zip(fields).collect do |v,field|
if String === v
v = v.to_f.round(2) if v =~ /^-?\d+\.\d+$/
v = v.to_i if v =~ /^-?\d+$/
end
if Numeric === v
if field =~ /p.?value/i
v = v.round(4)
v < 0.05 ? Log.color(:cyan, v.to_s) : v
else
v = v.round(2)
v < 0 ? Log.color(:red, v.to_s) : Log.color(:green, v.to_s)
end
else
v
end
end
puts [Log.color(:magenta, k), fvalues] * "\t"
end
Version data entries
50 entries across 50 versions & 1 rubygems