Class: GeneMergeValidationOutput

Inherits:

ValidationReport

• Object
• ValidationReport
• GeneMergeValidationOutput

show all

Defined in:

lib/genevalidator/validation_gene_merge.rb

Overview

Instance Attribute Summary (collapse)

• - (Object) slope readonly

  Returns the value of attribute slope.

• - (Object) threshold_down readonly

  Returns the value of attribute threshold_down.

• - (Object) threshold_up readonly

  Returns the value of attribute threshold_up.

Attributes inherited from ValidationReport

#bg_color, #errors, #expected, #message, #plot_files, #result, #validation_result

Instance Method Summary (collapse)

• - (Object) color
• - (GeneMergeValidationOutput) initialize(slope, threshold_down = 0.4, threshold_up = 1.2, expected = :no) constructor

  A new instance of GeneMergeValidationOutput.

• - (Object) print
• - (Object) validation

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# File 'lib/genevalidator/validation_gene_merge.rb', line 12

def initialize (slope, threshold_down = 0.4, threshold_up = 1.2, expected = :no)
  @slope          = slope
  @threshold_down = threshold_down
  @threshold_up   = threshold_up
  @result         = validation
  @expected       = expected
  @plot_files     = []
end

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# File 'lib/genevalidator/validation_gene_merge.rb', line 8

def slope
  @slope
end

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# File 'lib/genevalidator/validation_gene_merge.rb', line 9

def threshold_down
  @threshold_down
end

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# File 'lib/genevalidator/validation_gene_merge.rb', line 10

def threshold_up
  @threshold_up
end

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# File 'lib/genevalidator/validation_gene_merge.rb', line 39

def color
  if validation == :no
    "success"
  else
    "danger"
  end
end

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# File 'lib/genevalidator/validation_gene_merge.rb', line 21

def print
  if @slope.nan?  
    "slope=Inf"
  else
    "slope=#{@slope.round(2)}"
  end
end

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# File 'lib/genevalidator/validation_gene_merge.rb', line 29

def validation

  # color gene merge validation
  if @slope > threshold_down and @slope < threshold_up
    :yes
  else
    :no
  end
end