Sha256: 4284fe84d8a8f517f36569ed82d907ae4a9d3f9f9c83bfaa52fdb561b0aa5449
Contents?: true
Size: 922 Bytes
Versions: 8
Compression:
Stored size: 922 Bytes
Contents
module Ulla class Environment attr_accessor :amino_acids, :number, :label, :freq_array, :prob_array, :logo_array, :smooth_prob_array def initialize(number, label, amino_acids = "ACDEFGHIKLMNPQRSTVWYJ".split('')) @amino_acids = amino_acids @number = number @label = label @freq_array = $noweight ? NArray.int(@amino_acids.size) : NArray.float(@amino_acids.size) @prob_array = NArray.float(@amino_acids.size) @logo_array = NArray.float(@amino_acids.size) @smooth_prob_array = NArray.float(@amino_acids.size) end def increase_residue_count(a, inc = 1.0) @freq_array[@amino_acids.index(a.upcase)] += inc end def label_set label.split("").map_with_index { |l, i| "#{i}#{l}" }.to_set end def to_s "#{number}-#{label}" end end end
Version data entries
8 entries across 8 versions & 2 rubygems