# ======================================
# General parameters to extract Amplicons
# ======================================

# Help: <br/>This template is used to remove only bad quality regions<br/>

# Help: <br/><b>Plugin list and aplication order:</b><br/>

# Help: <ul>
# Help: <li>PluginLowQuality: trimming low quality regions from sequences. </li>
# Help: </ul>

plugin_list = PluginLowQuality

# do not remove cloned sequences
remove_clonality=false

# remove amplicons containing less or equal number of sequences indicated

generate_initial_stats = false

# Minimum insert size for every trimmed sequence

min_insert_size_trimmed = 30