--- !ruby/object:Gem::Specification
name: ngs-ci
version: !ruby/object:Gem::Version
  version: 0.0.2.b
platform: ruby
authors:
- Matthew Ralston
autorequire: 
bindir: bin
cert_chain: []
date: 2015-12-21 00:00:00.000000000 Z
dependencies:
- !ruby/object:Gem::Dependency
  name: trollop
  requirement: !ruby/object:Gem::Requirement
    requirements:
    - - "~>"
      - !ruby/object:Gem::Version
        version: 2.1.2
  type: :runtime
  prerelease: false
  version_requirements: !ruby/object:Gem::Requirement
    requirements:
    - - "~>"
      - !ruby/object:Gem::Version
        version: 2.1.2
- !ruby/object:Gem::Dependency
  name: bio-samtools
  requirement: !ruby/object:Gem::Requirement
    requirements:
    - - '='
      - !ruby/object:Gem::Version
        version: 2.3.2
  type: :runtime
  prerelease: false
  version_requirements: !ruby/object:Gem::Requirement
    requirements:
    - - '='
      - !ruby/object:Gem::Version
        version: 2.3.2
- !ruby/object:Gem::Dependency
  name: parallel
  requirement: !ruby/object:Gem::Requirement
    requirements:
    - - "~>"
      - !ruby/object:Gem::Version
        version: '1.4'
  type: :runtime
  prerelease: false
  version_requirements: !ruby/object:Gem::Requirement
    requirements:
    - - "~>"
      - !ruby/object:Gem::Version
        version: '1.4'
- !ruby/object:Gem::Dependency
  name: yell
  requirement: !ruby/object:Gem::Requirement
    requirements:
    - - "~>"
      - !ruby/object:Gem::Version
        version: '2'
  type: :runtime
  prerelease: false
  version_requirements: !ruby/object:Gem::Requirement
    requirements:
    - - "~>"
      - !ruby/object:Gem::Version
        version: '2'
- !ruby/object:Gem::Dependency
  name: ruby-prof
  requirement: !ruby/object:Gem::Requirement
    requirements:
    - - "~>"
      - !ruby/object:Gem::Version
        version: '0.15'
  type: :runtime
  prerelease: false
  version_requirements: !ruby/object:Gem::Requirement
    requirements:
    - - "~>"
      - !ruby/object:Gem::Version
        version: '0.15'
- !ruby/object:Gem::Dependency
  name: bundler
  requirement: !ruby/object:Gem::Requirement
    requirements:
    - - "~>"
      - !ruby/object:Gem::Version
        version: '1'
  type: :development
  prerelease: false
  version_requirements: !ruby/object:Gem::Requirement
    requirements:
    - - "~>"
      - !ruby/object:Gem::Version
        version: '1'
- !ruby/object:Gem::Dependency
  name: rake
  requirement: !ruby/object:Gem::Requirement
    requirements:
    - - "~>"
      - !ruby/object:Gem::Version
        version: '10.0'
  type: :development
  prerelease: false
  version_requirements: !ruby/object:Gem::Requirement
    requirements:
    - - "~>"
      - !ruby/object:Gem::Version
        version: '10.0'
- !ruby/object:Gem::Dependency
  name: rspec
  requirement: !ruby/object:Gem::Requirement
    requirements:
    - - "~>"
      - !ruby/object:Gem::Version
        version: '3.1'
  type: :development
  prerelease: false
  version_requirements: !ruby/object:Gem::Requirement
    requirements:
    - - "~>"
      - !ruby/object:Gem::Version
        version: '3.1'
- !ruby/object:Gem::Dependency
  name: pry
  requirement: !ruby/object:Gem::Requirement
    requirements:
    - - "~>"
      - !ruby/object:Gem::Version
        version: '0'
  type: :development
  prerelease: false
  version_requirements: !ruby/object:Gem::Requirement
    requirements:
    - - "~>"
      - !ruby/object:Gem::Version
        version: '0'
- !ruby/object:Gem::Dependency
  name: coveralls
  requirement: !ruby/object:Gem::Requirement
    requirements:
    - - "~>"
      - !ruby/object:Gem::Version
        version: '0'
  type: :development
  prerelease: false
  version_requirements: !ruby/object:Gem::Requirement
    requirements:
    - - "~>"
      - !ruby/object:Gem::Version
        version: '0'
description: Calculated a metric that estimates read complexity at each base for RNA-seq
  BAM files. Alternative to pileup format.
email:
- mrals89@gmail.com
executables:
- ngs-ci
extensions: []
extra_rdoc_files: []
files:
- ".coveralls.yml"
- ".gitignore"
- ".rspec"
- ".travis.yml"
- Gemfile
- LICENSE.txt
- README.md
- Rakefile
- TODO.md
- TODO.org
- bin/ngs-ci
- lib/NGSCI.rb
- lib/NGSCI/calculator.rb
- lib/NGSCI/cmd.rb
- lib/NGSCI/read.rb
- lib/NGSCI/version.rb
- ngs-ci.gemspec
- spec/lib/NGSCI_spec.rb
- spec/lib/bin_spec.rb
- spec/lib/calculator_spec.rb
- spec/lib/cmd_spec.rb
- spec/lib/read_spec.rb
- spec/spec_helper.rb
- spec/test_files/empty.bam
- spec/test_files/saturated.bam
- spec/test_files/saturated.bam.bai
- spec/test_files/test.bam
- spec/test_files/test.bam.bai
- spec/test_files/test.fa
homepage: ''
licenses:
- GPL v3
metadata: {}
post_install_message: 
rdoc_options: []
require_paths:
- lib
required_ruby_version: !ruby/object:Gem::Requirement
  requirements:
  - - ">="
    - !ruby/object:Gem::Version
      version: '0'
required_rubygems_version: !ruby/object:Gem::Requirement
  requirements:
  - - ">"
    - !ruby/object:Gem::Version
      version: 1.3.1
requirements: []
rubyforge_project: 
rubygems_version: 2.4.5
signing_key: 
specification_version: 4
summary: Next Generation Sequencing Complexity Index.
test_files:
- spec/lib/NGSCI_spec.rb
- spec/lib/bin_spec.rb
- spec/lib/calculator_spec.rb
- spec/lib/cmd_spec.rb
- spec/lib/read_spec.rb
- spec/spec_helper.rb
- spec/test_files/empty.bam
- spec/test_files/saturated.bam
- spec/test_files/saturated.bam.bai
- spec/test_files/test.bam
- spec/test_files/test.bam.bai
- spec/test_files/test.fa
has_rdoc:
- yard
- "~> 0"