#!/usr/bin/env ruby # Copyright (c) 2010-2012 The University of Manchester, UK. # # All rights reserved. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # # * Redistributions of source code must retain the above copyright notice, # this list of conditions and the following disclaimer. # # * Redistributions in binary form must reproduce the above copyright notice, # this list of conditions and the following disclaimer in the documentation # and/or other materials provided with the distribution. # # * Neither the names of The University of Manchester nor the names of its # contributors may be used to endorse or promote products derived from this # software without specific prior written permission. # # THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" # AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE # IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE # ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE # LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR # CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF # SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS # INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN # CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) # ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE # POSSIBILITY OF SUCH DAMAGE. # # Author: Robert Haines require 'rubygems' require 't2-server-cli' include T2Server::CLI # set up options options = {} ports = [] conn_params, creds = register_options("Usage: t2-get-output [options] " + "server-address run-id") do |opt| opt.separator " Where server-address is the full URI of the server to" opt.separator " connect to, e.g.: http://example.com:8080/taverna, run-ids" opt.separator " are the id numbers of the runs you want to collect output" opt.separator " from and [options] can be:" opt.on("-r", "--refs", "Return references to the output data rather than " + "the data itself.") do options[:refs] = true end opt.on("-o", "--output=OUTPUT", "Return the named output port. If none " + "are specified then list all the output ports.") do |val| ports << val.chomp end opt.on("-x", "--exitcode", "Return the exitcode of the run.") do options[:exitcode] = true end opt.on("-e", "--stderr", 'Return the "standard error" output of the run.') do options[:stderr] = true end opt.on("-s", "--stdout", 'Return the "standard out" output of the run.') do options[:stdout] = true end opt.on("-t", "--total-size", "Return the total size of the data in the " + "output.") do options[:tsize] = true end opt.on("-T", "--types", "Return the mime types of singleton ports.") do options[:types] = true end end # get run id and server address from the arguments run_id = "" address = "" for arg in ARGV argc = arg.chomp if argc.match(/https?:\/\//).nil? run_id = argc else address = argc end end uri, creds = parse_address(address, creds) if run_id.empty? puts opts exit 1 end # connect... begin server = T2Server::Server.new(uri, conn_params) run = server.run(run_id, creds) ports = run.output_ports.keys if ports.empty? ports.each do |p| port = run.output_port(p) puts "#{port.name}" if options[:refs] print " Reference: " p port.reference else print " Value: " p port.value end if options[:types] print " Type: " p port.type end if options[:tsize] puts " Total data size: #{port.total_size}" end end if options[:exitcode] puts "Exitcode: #{run.exitcode}" end if options[:stdout] puts "Stdout: #{run.stdout}" end if options[:stderr] puts "Stderr: #{run.stderr}" end rescue RuntimeError => e puts e exit 1 end