--- !ruby/object:Gem::Specification 
name: bio-gff3
version: !ruby/object:Gem::Version 
  prerelease: false
  segments: 
  - 0
  - 8
  - 5
  version: 0.8.5
platform: ruby
authors: 
- Pjotr Prins
autorequire: 
bindir: bin
cert_chain: []

date: 2011-01-13 00:00:00 +01:00
default_executable: gff3-fetch
dependencies: 
- !ruby/object:Gem::Dependency 
  name: bio
  requirement: &id001 !ruby/object:Gem::Requirement 
    none: false
    requirements: 
    - - ">="
      - !ruby/object:Gem::Version 
        segments: 
        - 1
        - 3
        - 1
        version: 1.3.1
  type: :runtime
  prerelease: false
  version_requirements: *id001
- !ruby/object:Gem::Dependency 
  name: bio-logger
  requirement: &id002 !ruby/object:Gem::Requirement 
    none: false
    requirements: 
    - - ">"
      - !ruby/object:Gem::Version 
        segments: 
        - 0
        - 5
        - 0
        version: 0.5.0
  type: :runtime
  prerelease: false
  version_requirements: *id002
- !ruby/object:Gem::Dependency 
  name: shoulda
  requirement: &id003 !ruby/object:Gem::Requirement 
    none: false
    requirements: 
    - - ">="
      - !ruby/object:Gem::Version 
        segments: 
        - 0
        version: "0"
  type: :development
  prerelease: false
  version_requirements: *id003
- !ruby/object:Gem::Dependency 
  name: bundler
  requirement: &id004 !ruby/object:Gem::Requirement 
    none: false
    requirements: 
    - - ~>
      - !ruby/object:Gem::Version 
        segments: 
        - 1
        - 0
        - 0
        version: 1.0.0
  type: :development
  prerelease: false
  version_requirements: *id004
- !ruby/object:Gem::Dependency 
  name: jeweler
  requirement: &id005 !ruby/object:Gem::Requirement 
    none: false
    requirements: 
    - - ~>
      - !ruby/object:Gem::Version 
        segments: 
        - 1
        - 5
        - 2
        version: 1.5.2
  type: :development
  prerelease: false
  version_requirements: *id005
- !ruby/object:Gem::Dependency 
  name: rcov
  requirement: &id006 !ruby/object:Gem::Requirement 
    none: false
    requirements: 
    - - ">="
      - !ruby/object:Gem::Version 
        segments: 
        - 0
        version: "0"
  type: :development
  prerelease: false
  version_requirements: *id006
- !ruby/object:Gem::Dependency 
  name: rspec
  requirement: &id007 !ruby/object:Gem::Requirement 
    none: false
    requirements: 
    - - ">="
      - !ruby/object:Gem::Version 
        segments: 
        - 2
        - 0
        - 0
        version: 2.0.0
  type: :development
  prerelease: false
  version_requirements: *id007
- !ruby/object:Gem::Dependency 
  name: bio
  requirement: &id008 !ruby/object:Gem::Requirement 
    none: false
    requirements: 
    - - ">="
      - !ruby/object:Gem::Version 
        segments: 
        - 1
        - 4
        - 1
        version: 1.4.1
  type: :runtime
  prerelease: false
  version_requirements: *id008
- !ruby/object:Gem::Dependency 
  name: log4r
  requirement: &id009 !ruby/object:Gem::Requirement 
    none: false
    requirements: 
    - - ">"
      - !ruby/object:Gem::Version 
        segments: 
        - 1
        - 1
        - 6
        version: 1.1.6
  type: :runtime
  prerelease: false
  version_requirements: *id009
- !ruby/object:Gem::Dependency 
  name: bio-logger
  requirement: &id010 !ruby/object:Gem::Requirement 
    none: false
    requirements: 
    - - ">="
      - !ruby/object:Gem::Version 
        segments: 
        - 0
        - 6
        - 1
        version: 0.6.1
  type: :runtime
  prerelease: false
  version_requirements: *id010
- !ruby/object:Gem::Dependency 
  name: rspec
  requirement: &id011 !ruby/object:Gem::Requirement 
    none: false
    requirements: 
    - - ">"
      - !ruby/object:Gem::Version 
        segments: 
        - 2
        - 0
        version: "2.0"
  type: :development
  prerelease: false
  version_requirements: *id011
description: |
  GFF3 (genome browser) information and digest mRNA and CDS sequences.
  Options for low memory use and caching of records.
  Support for external FASTA files.

email: pjotr.prins@thebird.nl
executables: 
- gff3-fetch
extensions: []

extra_rdoc_files: 
- LICENSE.txt
- README.rdoc
files: 
- Gemfile
- Gemfile.lock
- LICENSE.txt
- README.rdoc
- Rakefile
- VERSION
- bin/gff3-fetch
- bio-gff3.gemspec
- lib/bio-gff3.rb
- lib/bio/db/gff/digest/gffinmemory.rb
- lib/bio/db/gff/digest/gffnocache.rb
- lib/bio/db/gff/digest/gffparser.rb
- lib/bio/db/gff/file/gfffasta.rb
- lib/bio/db/gff/file/gfffileiterator.rb
- lib/bio/db/gff/gff3.rb
- lib/bio/db/gff/gff3fasta.rb
- lib/bio/db/gff/gff3parsefile.rb
- lib/bio/db/gff/gff3parserec.rb
- lib/bio/db/gff/gffcomponent.rb
- lib/bio/db/gff/gffrecord.rb
- lib/bio/db/gff/gffsection.rb
- lib/bio/db/gff/gffsequence.rb
- lib/bio/db/gff/gffvalidate.rb
- lib/bio/output/gfffastawriter.rb
- lib/bio/output/gfflogger.rb
- lib/bio/system/lruhash.rb
- spec/gff3_assemble2_spec.rb
- spec/gff3_assemble3_spec.rb
- spec/gff3_assemble_spec.rb
- spec/gff3_fileiterator_spec.rb
- spec/gffdb_spec.rb
- spec/gffparserec.rb
- test/data/gff/MhA1_Contig1133.fa
- test/data/gff/MhA1_Contig1133.gff3
- test/data/gff/MhA1_Contig125.fa
- test/data/gff/MhA1_Contig125.gff3
- test/data/gff/standard.gff3
- test/data/gff/test-cds.gff3
- test/data/gff/test-ext-fasta.fa
- test/data/gff/test-ext-fasta.gff3
- test/data/gff/test.gff3
- test/data/regression/test_ext_gff3.rtest
- test/data/regression/test_gff3.rtest
- test/data/regression/test_nocache_ext_gff3.rtest
- test/data/regression/test_nocache_gff3.rtest
- test/helper.rb
- test/regressiontest.rb
- test/test_bio-gff3.rb
has_rdoc: true
homepage: http://github.com/pjotrp/bioruby-gff3
licenses: 
- MIT
post_install_message: 
rdoc_options: []

require_paths: 
- lib
required_ruby_version: !ruby/object:Gem::Requirement 
  none: false
  requirements: 
  - - ">="
    - !ruby/object:Gem::Version 
      segments: 
      - 0
      version: "0"
required_rubygems_version: !ruby/object:Gem::Requirement 
  none: false
  requirements: 
  - - ">="
    - !ruby/object:Gem::Version 
      segments: 
      - 0
      version: "0"
requirements: []

rubyforge_project: 
rubygems_version: 1.3.7
signing_key: 
specification_version: 3
summary: BioRuby GFF3 plugin for big data
test_files: 
- spec/gff3_assemble2_spec.rb
- spec/gff3_assemble3_spec.rb
- spec/gff3_assemble_spec.rb
- spec/gff3_fileiterator_spec.rb
- spec/gffdb_spec.rb
- spec/gffparserec.rb
- test/helper.rb
- test/regressiontest.rb
- test/test_bio-gff3.rb