Sha256: 38001f56f9731b74872b60a544aea7aa3fadbfdc05da057d5f8a179f60e72ade
Contents?: true
Size: 506 Bytes
Versions: 22
Compression:
Stored size: 506 Bytes
Contents
##
# SORT JOINED READS BY LENGTH
#
module Lederhosen
class CLI
desc "sort",
"sort reads by length in descending order (pre-requisite for UCLUST)"
method_option :input, :type => :string, :required => true
method_option :output, :type => :string, :required => true
def sort
input = options[:input]
output = options[:output]
ohai "sorting #{input}"
@shell.mute {
run "uclust --mergesort #{input} --output #{output}"
}
end
end
end
Version data entries
22 entries across 22 versions & 1 rubygems