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Contents
test_suite hamming
integer :: distance
setup
end setup
test identical_strands
assert_true( compute('A', 'A', distance ) )
assert_equal( 0, distance )
end test
Xtest long_identical_strands
assert_true( compute('GGACTGA', 'GGACTGA', distance ) )
assert_equal( 0, distance )
end test
Xtest complete_distance_in_single_nucleotide_strands
assert_true( compute('A', 'G', distance) )
assert_equal( 1, distance )
end test
Xtest complete_distance_in_small_strands
assert_true( compute('AG', 'CT', distance) )
assert_equal( 2, distance )
end test
Xtest small_distance_in_small_strands
assert_true( compute('AT', 'CT', distance) )
assert_equal( 1, distance )
end test
Xtest small_distance
assert_true( compute('GGACG', 'GGTCG', distance) )
assert_equal( 1, distance )
end test
Xtest small_distance_in_long_strands
assert_true( compute('ACCAGGG', 'ACTATGG', distance) )
assert_equal( 2, distance )
end test
Xtest non_unique_character_in_first_strand
assert_true( compute('AGA', 'AGG', distance) )
assert_equal( 1, distance )
end test
Xtest same_nucleotides_in_different_positions
assert_true( compute('TAG', 'GAT', distance) )
assert_equal( 2, distance )
end test
Xtest large_distance
assert_true( compute('GATACA', 'GCATAA', distance) )
assert_equal( 4, distance )
end test
Xtest large_distance_in_off_by_one_strand
assert_true( compute('GGACGGATTCTG', 'AGGACGGATTCT', distance) )
assert_equal( 9, distance )
end test
Xtest empty_strands
assert_true( compute('', '', distance) )
assert_equal( 0, distance )
end test
Xtest disallow_first_strand_longer
assert_false( compute('AATG', 'AAA', distance) )
end test
Xtest disallow_second_strand_longer
assert_false( compute('ATA', 'AGTG', distance) )
end test
end test_suite
Version data entries
214 entries across 214 versions & 1 rubygems