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genomer-summary-gaps(1) -- summarise the gaps in the scaffold
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## SYNOPSIS
`genomer summary gaps`
## DESCRIPTION
Generates a summary of the gaps (regions of N characters) in the scaffolded
output sequence. This summary command lists these gaps with the following
attributes:
* Number:
Incremental gap number from the start of the sequence.
* Length:
The length of the gap sequence.
* Start:
The start of the gap sequence in the output sequence.
* End:
The end of the gap sequence in the output sequence.
* Type:
Whether the gap is **specified** in the scaffold file as an unresolved
region or is a **contig** gaps which appears in one of the contigs used to
build the scaffold.
## BUGS
**Genomer-summary** is written in Ruby and uses several RubyGem dependencies.
See the .gemspec file in the install directory for version details.
## COPYRIGHT
**Genomer** is Copyright (C) 2011 Michael Barton <http://michaelbarton.me.uk>
Version data entries
4 entries across 4 versions & 1 rubygems