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Versions: 14
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Contents
/*
Copyright 2010 Daniel Zerbino (zerbino@ebi.ac.uk)
This file is part of Velvet.
Velvet is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
Velvet is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with Velvet; if not, write to the Free Software
Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
*/
#ifndef _KMEROCCURENCETABLE_H_
#define _KMEROCCURENCETABLE_H_
// Table operations
KmerOccurenceTable * newKmerOccurenceTable(short int accelerationBits, int wordLength);
void allocateKmerOccurences(IDnum kmerCount, KmerOccurenceTable * table);
void recordKmerOccurence(Kmer * kmer, IDnum nodeID, Coordinate position, KmerOccurenceTable * table);
void sortKmerOccurenceTable(KmerOccurenceTable * table);
KmerOccurence *findKmerInKmerOccurenceTable(Kmer * kmer,
KmerOccurenceTable *
table);
void destroyKmerOccurenceTable(KmerOccurenceTable * kmerTable);
// Node operations
KmerOccurence * getNextKmerOccurence(KmerOccurence * current);
IDnum getKmerOccurenceNodeID(KmerOccurence * occurence);
Coordinate getKmerOccurencePosition(KmerOccurence * occurence);
#endif
Version data entries
14 entries across 14 versions & 2 rubygems