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Contents
#
# test/unit/bio/appl/meme/test_mast.rb - Unit test for Bio::Meme::Mast::Report
#
# Copyright:: Copyright (C) 2008 Adam Kraut <adamnkraut@gmail.com>
# License:: The Ruby License
#
# loading helper routine for testing bioruby
require 'pathname'
load Pathname.new(File.join(File.dirname(__FILE__), ['..'] * 5,
'bioruby_test_helper.rb')).cleanpath.to_s
# libraries needed for the tests
require 'test/unit'
require 'bio/appl/meme/mast/report'
module Bio
module TestMastReportData
TEST_DATA = Pathname.new(File.join(BioRubyTestDataPath, 'meme')).cleanpath.to_s
def self.example_mast_output
File.join TEST_DATA, 'mast.out'
end
end
class TestMastReport < Test::Unit::TestCase
TEST_DATA = TestMastReportData::TEST_DATA
def setup
@report = Meme::Mast::Report.new(File.read(TestMastReportData.example_mast_output))
end
def test_report_has_motifs
obj = @report.motifs.first
assert_kind_of(Meme::Motif, obj)
end
def test_parse_hit_list_with_bad_data
data = "#heres\n2 bad data lines\n"
assert_raises(RuntimeError) { Meme::Mast::Report.new(data) }
end
end # TestMastReport
end # Bio
Version data entries
15 entries across 15 versions & 1 rubygems