module Clinical
class Trial
include HappyMapper
include HTTParty
base_uri "http://clinicaltrials.gov"
default_params :displayxml => true
tag "clinical_study"
element :nct_id, String, :deep => true
element :read_status, Clinical::Status, :tag => "status", :parser => :parse
element :overall_status, Clinical::Status, :parser => :parse
element :url, String
element :short_title, String, :tag => "title"
element :official_title, String
element :condition_summary, String
has_many :condition_items, Clinical::Condition, :tag => "condition", :raw => true
element :text_phase, String, :tag => "phase"
element :study_type, String
element :study_design, String
has_one :lead_sponsor, Clinical::LeadSponsor
has_many :collaborators, Clinical::Collaborator
has_many :agencies, Clinical::Agency
has_one :overall_official, Clinical::OverallOfficial, :tag => "overall_official"
has_many :interventions, Intervention, :tag => "intervention"
has_many :primary_outcomes, PrimaryOutcome
has_many :secondary_outcomes, SecondaryOutcome
has_many :locations, Location, :tag => "location"
element :start_date, Date
element :end_date, Date
element :first_received_at, Date, :tag => "firstreceived_date"
element :updated_at, Date, :tag => "lastchanged_date"
element :minimum_age, String, :tag => "eligibility/minimum_age"
element :maximum_age, String, :tag => "eligibility/maximum_age"
element :gender, String, :tag => "eligibility/gender"
element :healthy_volunteers, String, :tag => "eligibility/healthy_volunteers"
element :participant_quantity, Integer, :tag => "enrollment"
element :url, String, :tag => "required_header/url"
element :eligibility_criteria, String, :tag => "eligibility/criteria/textblock"
element :brief_summary, String, :tag => "brief_summary/textblock"
element :detailed_description, String, :tag => "brief_summary/textblock"
attr_reader :keywords
attr_reader :categories
attr_reader :terms
def id
self.nct_id
end
def open?
self.status && self.status.open?
end
def sponsors
@sponsors ||= [lead_sponsor, (collaborators || []), (agencies || [])].flatten
end
def outcomes
@outcomes ||= [primary_outcomes, secondary_outcomes].flatten
end
def status
self.read_status || self.overall_status
end
def conditions
if condition_items.nil? || condition_items.empty?
condition_summary.nil? ? nil : condition_summary.split(";")
else
condition_items
end
end
def phase
self.text_phase.gsub(/phase /i, "").to_i
end
#this metadata is not accessible in the feed so crawl the html page
#to get keywords, categories, and terms
def get_metadata
response = self.class.get("/show/#{id}", :query => {:displayxml => false})
html = Nokogiri::HTML(response.body)
metadata = {}
{
:terms => 0,
:categories => 1,
:keywords => 2
}.each do |key, value|
metadata[key] = []
html.search("div.indent3:nth-last-child(#{value}) td").each do |td|
word = td.inner_html.split(/\
/).collect{|i| i.gsub(/\