--- !ruby/object:Gem::Specification 
rubygems_version: 0.8.11
specification_version: 1
name: bio
version: !ruby/object:Gem::Version 
  version: 0.7.0
date: 2005-12-19 00:00:00 +09:00
summary: BioRuby is a library for bioinformatics (biology + information science).
require_paths: 
  - lib
email: staff@bioruby.org
homepage: http://bioruby.org/
rubyforge_project: 
description: 
autorequire: bio
default_executable: 
bindir: bin
has_rdoc: false
required_ruby_version: !ruby/object:Gem::Version::Requirement 
  requirements: 
    - 
      - ">"
      - !ruby/object:Gem::Version 
        version: 0.0.0
  version: 
platform: ruby
signing_key: 
cert_chain: 
authors: 
  - BioRuby project
files: 
  - bin/bioruby
  - bin/br_biofetch.rb
  - bin/br_bioflat.rb
  - bin/br_biogetseq.rb
  - bin/br_pmfetch.rb
  - doc/BioRuby.rd.ja
  - doc/Changes-0.7.rd
  - doc/Design.rd.ja
  - doc/KEGG_API.rd
  - doc/KEGG_API.rd.ja
  - doc/TODO.rd.ja
  - doc/Tutorial.rd
  - doc/Tutorial.rd.ja
  - etc/bioinformatics
  - etc/bioinformatics/seqdatabase.ini
  - lib/bio
  - lib/bio.rb
  - lib/bioruby.rb
  - lib/bio/alignment.rb
  - lib/bio/appl
  - lib/bio/command.rb
  - lib/bio/data
  - lib/bio/db
  - lib/bio/db.rb
  - lib/bio/feature.rb
  - lib/bio/io
  - lib/bio/location.rb
  - lib/bio/pathway.rb
  - lib/bio/reference.rb
  - lib/bio/sequence.rb
  - lib/bio/shell
  - lib/bio/shell.rb
  - lib/bio/util
  - lib/bio/appl/bl2seq
  - lib/bio/appl/blast
  - lib/bio/appl/blast.rb
  - lib/bio/appl/blat
  - lib/bio/appl/clustalw
  - lib/bio/appl/clustalw.rb
  - lib/bio/appl/emboss.rb
  - lib/bio/appl/fasta
  - lib/bio/appl/fasta.rb
  - lib/bio/appl/genscan
  - lib/bio/appl/hmmer
  - lib/bio/appl/hmmer.rb
  - lib/bio/appl/mafft
  - lib/bio/appl/mafft.rb
  - lib/bio/appl/psort
  - lib/bio/appl/psort.rb
  - lib/bio/appl/sim4
  - lib/bio/appl/sim4.rb
  - lib/bio/appl/sosui
  - lib/bio/appl/spidey
  - lib/bio/appl/targetp
  - lib/bio/appl/tmhmm
  - lib/bio/appl/bl2seq/report.rb
  - lib/bio/appl/blast/format0.rb
  - lib/bio/appl/blast/format8.rb
  - lib/bio/appl/blast/report.rb
  - lib/bio/appl/blast/rexml.rb
  - lib/bio/appl/blast/wublast.rb
  - lib/bio/appl/blast/xmlparser.rb
  - lib/bio/appl/blat/report.rb
  - lib/bio/appl/clustalw/report.rb
  - lib/bio/appl/fasta/format10.rb
  - lib/bio/appl/fasta/format6.rb
  - lib/bio/appl/genscan/report.rb
  - lib/bio/appl/hmmer/report.rb
  - lib/bio/appl/mafft/report.rb
  - lib/bio/appl/psort/report.rb
  - lib/bio/appl/sim4/report.rb
  - lib/bio/appl/sosui/report.rb
  - lib/bio/appl/spidey/report.rb
  - lib/bio/appl/targetp/report.rb
  - lib/bio/appl/tmhmm/report.rb
  - lib/bio/data/aa.rb
  - lib/bio/data/codontable.rb
  - lib/bio/data/na.rb
  - lib/bio/db/aaindex.rb
  - lib/bio/db/embl
  - lib/bio/db/fantom.rb
  - lib/bio/db/fasta.rb
  - lib/bio/db/genbank
  - lib/bio/db/gff.rb
  - lib/bio/db/go.rb
  - lib/bio/db/kegg
  - lib/bio/db/litdb.rb
  - lib/bio/db/medline.rb
  - lib/bio/db/nbrf.rb
  - lib/bio/db/pdb
  - lib/bio/db/pdb.rb
  - lib/bio/db/prosite.rb
  - lib/bio/db/rebase.rb
  - lib/bio/db/transfac.rb
  - lib/bio/db/embl/common.rb
  - lib/bio/db/embl/embl.rb
  - lib/bio/db/embl/sptr.rb
  - lib/bio/db/embl/swissprot.rb
  - lib/bio/db/embl/trembl.rb
  - lib/bio/db/embl/uniprot.rb
  - lib/bio/db/genbank/common.rb
  - lib/bio/db/genbank/ddbj.rb
  - lib/bio/db/genbank/genbank.rb
  - lib/bio/db/genbank/genpept.rb
  - lib/bio/db/genbank/refseq.rb
  - lib/bio/db/kegg/brite.rb
  - lib/bio/db/kegg/cell.rb
  - lib/bio/db/kegg/compound.rb
  - lib/bio/db/kegg/enzyme.rb
  - lib/bio/db/kegg/expression.rb
  - lib/bio/db/kegg/genes.rb
  - lib/bio/db/kegg/genome.rb
  - lib/bio/db/kegg/glycan.rb
  - lib/bio/db/kegg/keggtab.rb
  - lib/bio/db/kegg/kgml.rb
  - lib/bio/db/kegg/ko.rb
  - lib/bio/db/kegg/reaction.rb
  - lib/bio/db/pdb/atom.rb
  - lib/bio/db/pdb/chain.rb
  - lib/bio/db/pdb/model.rb
  - lib/bio/db/pdb/pdb.rb
  - lib/bio/db/pdb/residue.rb
  - lib/bio/db/pdb/utils.rb
  - lib/bio/io/brdb.rb
  - lib/bio/io/das.rb
  - lib/bio/io/dbget.rb
  - lib/bio/io/ddbjxml.rb
  - lib/bio/io/fastacmd.rb
  - lib/bio/io/fetch.rb
  - lib/bio/io/flatfile
  - lib/bio/io/flatfile.rb
  - lib/bio/io/higet.rb
  - lib/bio/io/keggapi.rb
  - lib/bio/io/pubmed.rb
  - lib/bio/io/registry.rb
  - lib/bio/io/soapwsdl.rb
  - lib/bio/io/sql.rb
  - lib/bio/io/flatfile/bdb.rb
  - lib/bio/io/flatfile/index.rb
  - lib/bio/io/flatfile/indexer.rb
  - lib/bio/shell/core.rb
  - lib/bio/shell/plugin
  - lib/bio/shell/session.rb
  - lib/bio/shell/plugin/codon.rb
  - lib/bio/shell/plugin/entry.rb
  - lib/bio/shell/plugin/flatfile.rb
  - lib/bio/shell/plugin/keggapi.rb
  - lib/bio/shell/plugin/midi.rb
  - lib/bio/shell/plugin/obda.rb
  - lib/bio/shell/plugin/seq.rb
  - lib/bio/util/color_scheme
  - lib/bio/util/color_scheme.rb
  - lib/bio/util/contingency_table.rb
  - lib/bio/util/sirna.rb
  - lib/bio/util/color_scheme/buried.rb
  - lib/bio/util/color_scheme/helix.rb
  - lib/bio/util/color_scheme/hydropathy.rb
  - lib/bio/util/color_scheme/nucleotide.rb
  - lib/bio/util/color_scheme/strand.rb
  - lib/bio/util/color_scheme/taylor.rb
  - lib/bio/util/color_scheme/turn.rb
  - lib/bio/util/color_scheme/zappo.rb
  - sample/biofetch.rb
  - sample/color_scheme_na.rb
  - sample/dbget
  - sample/fasta2tab.rb
  - sample/fsplit.rb
  - sample/gb2fasta.rb
  - sample/gb2tab.rb
  - sample/gbtab2mysql.rb
  - sample/genes2nuc.rb
  - sample/genes2pep.rb
  - sample/genes2tab.rb
  - sample/genome2rb.rb
  - sample/genome2tab.rb
  - sample/goslim.rb
  - sample/gt2fasta.rb
  - sample/pmfetch.rb
  - sample/pmsearch.rb
  - sample/psortplot_html.rb
  - sample/ssearch2tab.rb
  - sample/tdiary.rb
  - sample/tfastx2tab.rb
  - sample/vs-genes.rb
  - test/data
  - test/functional
  - test/runner.rb
  - test/unit
  - test/data/blast
  - test/data/embl
  - test/data/genscan
  - test/data/prosite
  - test/data/refseq
  - test/data/SOSUI
  - test/data/TMHMM
  - test/data/uniprot
  - test/data/blast/eco:b0002.faa
  - test/data/blast/eco:b0002.faa.m0
  - test/data/blast/eco:b0002.faa.m7
  - test/data/blast/eco:b0002.faa.m8
  - test/data/embl/AB090716.embl
  - test/data/genscan/sample.report
  - test/data/prosite/prosite.dat
  - test/data/refseq/nm_126355.entret
  - test/data/SOSUI/sample.report
  - test/data/TMHMM/sample.report
  - test/data/uniprot/p53_human.uniprot
  - test/functional/bio
  - test/functional/bio/io
  - test/unit/bio
  - test/unit/bio/appl
  - test/unit/bio/data
  - test/unit/bio/db
  - test/unit/bio/io
  - test/unit/bio/shell
  - test/unit/bio/test_alignment.rb
  - test/unit/bio/test_command.rb
  - test/unit/bio/test_db.rb
  - test/unit/bio/test_feature.rb
  - test/unit/bio/test_location.rb
  - test/unit/bio/test_pathway.rb
  - test/unit/bio/test_sequence.rb
  - test/unit/bio/test_shell.rb
  - test/unit/bio/util
  - test/unit/bio/appl/blast
  - test/unit/bio/appl/genscan
  - test/unit/bio/appl/sosui
  - test/unit/bio/appl/targetp
  - test/unit/bio/appl/test_blast.rb
  - test/unit/bio/appl/test_fasta.rb
  - test/unit/bio/appl/tmhmm
  - test/unit/bio/appl/blast/test_report.rb
  - test/unit/bio/appl/blast/test_xmlparser.rb
  - test/unit/bio/appl/genscan/test_report.rb
  - test/unit/bio/appl/sosui/test_report.rb
  - test/unit/bio/appl/targetp/test_report.rb
  - test/unit/bio/appl/tmhmm/test_report.rb
  - test/unit/bio/data/test_aa.rb
  - test/unit/bio/data/test_codontable.rb
  - test/unit/bio/data/test_na.rb
  - test/unit/bio/db/embl
  - test/unit/bio/db/kegg
  - test/unit/bio/db/test_fasta.rb
  - test/unit/bio/db/test_gff.rb
  - test/unit/bio/db/test_prosite.rb
  - test/unit/bio/db/embl/test_common.rb
  - test/unit/bio/db/embl/test_embl.rb
  - test/unit/bio/db/embl/test_sptr.rb
  - test/unit/bio/db/embl/test_uniprot.rb
  - test/unit/bio/db/kegg/test_genes.rb
  - test/unit/bio/io/test_ddbjxml.rb
  - test/unit/bio/io/test_soapwsdl.rb
  - test/unit/bio/shell/plugin
  - test/unit/bio/shell/plugin/test_seq.rb
  - test/unit/bio/util/test_color_scheme.rb
  - test/unit/bio/util/test_contingency_table.rb
  - test/unit/bio/util/test_sirna.rb
test_files: []
rdoc_options: []
extra_rdoc_files: []
executables: []
extensions: []
requirements: []
dependencies: []