function checkCollapseState(){"use strict";if($.cookie("GeneValidator_adv_params_status")){var G=$.cookie("GeneValidator_adv_params_status");if("open"===G){var T=document.getElementById("adv_params_btn");T.innerHTML='<i class="fa fa-pencil-square-o"></i>&nbsp;&nbsp;Hide Advanced Parameters',$("#adv_params").addClass("in")}}}function keepFooterFixedToBottom(){"use strict";$("#mainbody").css({"margin-bottom":$("#footer").height()+15+"px"}),$(window).resize(function(){$("#mainbody").css({"margin-bottom":$("#footer").height()+15+"px"})})}function addSeqValidation(){"use strict";jQuery.validator.addMethod("checkInputType",function(G,T){var A=[];if(">"===G.charAt(0)){for(var e=G.split(">"),C=1;C<e.length;C++){var t=e[C].split("\n");if(0!==t.length){var a=jQuery.grep(t,function(G){return G});if(0!==a.length){a.shift();var n=a.join(""),r=checkType(n,.9);if(A.push(r),"protein"!==r&&"dna"!==r&&"rna"!==r)return!1}}}for(var V=A[0],s=0;s<A.length;s++)if(A[s]!==V)return!1;return!0}var r=checkType(G,.9);return"protein"!==r&&"dna"!==r&&"rna"!==r?!1:!0},"* The Input must be either DNA or protein sequence(s). Please ensure that your sequences do not contains any non-letter character(s). If there are multiple sequences, ensure that they are all of one type. ")}function inputValidation(){"use strict";var G=$("#seq").attr("data-maxCharacters");$("#input").validate({rules:{seq:{minlength:5,required:!0,checkInputType:!0,maxlength:G},"validations[]":{required:!0}},highlight:function(G){$(G).closest(".form-group").addClass("has-error")},unhighlight:function(G){$(G).closest(".form-group").removeClass("has-error")},errorElement:"span",errorClass:"help-block",errorPlacement:function(G,T){if("validations_group"===T.parent().parent().attr("id")){var A=document.getElementById("lastValidation");G.insertAfter(A)}else G.insertAfter(T.parent(".input-group").length?T.parent():T)},submitHandler:function(G){$("#spinner").modal({backdrop:"static",keyboard:"false"}),ajaxFunction()}})}function ajaxFunction(){"use strict";$.ajax({type:"POST",url:$("#input").attr("action"),data:$("#input").serialize(),success:function(G){$("#results_box").show(),$("#output").html(G),initTableSorter(),$("[data-toggle='tooltip']").tooltip(),removeEmptyColumns(),$("#mainbody").css({"background-color":"#fff"}),$("#search").css({"background-color":"#F5F5F5"}),$("#results").css({"border-top":"3px solid #DBDBDB"}),$("#search").css({"margin-bottom":"0"}),$("#spinner").modal("hide")},error:function(G,T){var A;500==G.status?(A=G.responseText,$("#results_box").show(),$("#output").html(A),$("#spinner").modal("hide")):(A=G.responseText,$("#results_box").show(),$("#output").html("There seems to be an unidentified Error."),$("#spinner").modal("hide"))}})}function initTableSorter(){"use strict";$.tablesorter.addParser({id:"star_scores",is:function(G){return!1},format:function(G,T,A,e){var C=$(A);return 1===e?C.attr("data-score")||G:G},parsed:!1,type:"numeric"}),$("table").tablesorter({headers:{1:{sorter:"star_scores"}},sortList:[[0,0]]})}function removeEmptyColumns(){"use strict";$("#sortable_table tr th").each(function(G){var T=$(this).parents("table").find("tr td:nth-child("+(G+1)+")");$(this).hasClass("chart-column")||""==$(this).text().trim()&&($(this).hide(),T.hide())})}function changeAdvParamsBtnText(){"use strict";var G=document.getElementById("adv_params_btn");'<i class="fa fa-pencil-square-o"></i>&nbsp;&nbsp;Show Advanced Parameters'===G.innerHTML?(G.innerHTML='<i class="fa fa-pencil-square-o"></i>&nbsp;&nbsp;Hide Advanced Parameters',$("#adv_params").collapse("show"),$.cookie("GeneValidator_adv_params_status","open")):(G.innerHTML='<i class="fa fa-pencil-square-o"></i>&nbsp;&nbsp;Show Advanced Parameters',$("#adv_params").collapse("hide"),$.cookie("GeneValidator_adv_params_status","closed"))}function examplarSequence(G){"use strict";var T=">Insulin\nATGGCTCTCTGGATCCGGTCGCTGCCTCTCCTGGCCCTTCTTGCTCTTTCTGGCCCTGGGATCAGCCACGCAGCTGCCAACCAGCACCTCTGTGGCTCCCACTTGGTTGAGGCTCTCTACCTGGTGTGTGGGGAGCGGGGTTTCTTCTACTCCCCCAAAACACGGCGGGACGTTGAGCAGCCTCTAGTGAACGGTCCCCTGCATGGCGAGGTGGGAGAGCTGCCGTTCCAGCATGAGGAATACCAGAAAGTCAAGCGAGGCATCGTTGAGCAATGCTGTGAAAACCCGTGCTCCCTCTACCAACTGGAAAACTACTGCAACTAG\n>Insulin (with a duplication)\nATGGCTCTCTGGATCCGGTCGCTGCCTCTCCTGGCCCTTCTTGCTCTTTCTGGCCCTGGGATCAGCCACGCAGCTGCCAACCAGCACCTCTGTGGCTCCCACTTGGTTGAGGCTCTCTACCTGGTGTGTGGGGAGCGGGGTTTCTTCTACTCCCCCAAAACACGGCGGGACGTTGAGCAGCCTCTAGTGAACGGTCCCCTGCATGGCGAGGTGGGAGAGCTGCCGTTCCAGCATGAGGAATACCAGACAGCACCTCTGTGGCTCCCACTTGGTTGAGGCTCTCTACCTGGTGTGTGGGGAGCGGGGTTTCTTCTACTCCCCCAAAACACGGCGGGACGTTGAGCAGCCTCTAGTGAACGGTCCCCTGCATGGCGAGGTGGGAGAGCTGCCGTTCCAGCATGAGGAATACCAGAAAGTCAAGCGAGGCATCGTTGAGCAATGCTGTGAAAACCCGTGCTCCCTCTACCAACTGGAAAACTACTGCAACTAG",A=">Methylmalonyl-CoA carboxyltransferase 12S \nMAENNNLKLASTMEGRVEQLAEQRQVIEAGGGERRVEKQHSQGKQTARERLNNLLDPHSFDEVGAFRKHRTTLFGMDKAVVPADGVVTGRGTILGRPVHAASQDFTVMGGSAGETQSTKVVETMEQALLTGTPFLFFYDSGGARIQEGIDSLSGYGKMFFANVKLSGVVPQIAIIAGPCAGGASYSPALTDFIIMTKKAHMFITGPQVIKSVTGEDVTADELGGAEAHMAISGNIHFVAEDDDAAELIAKKLLSFLPQNNTEEASFVNPNNDVSPNTELRDIVPIDGKKGYDVRDVIAKIVDWGDYLEVKAGYATNLVTAFARVNGRSVGIVANQPSVMSGCLDINASDKAAEFVNFCDSFNIPLVQLVDVPGFLPGVQQEYGGIIRHGAKMLYAYSEATVPKITVVLRKAYGGSYLAMCNRDLGADAVYAWPSAEIAVMGAEGAANVIFRKEIKAADDPDAMRAEKIEEYQNAFNTPYVAAARGQVDDVIDPADTRRKIASALEMYATKRQTRPAKKPWKLPLLSEEEIMADEEEKDLMIATLNKRVASLESELGSLQSDTQGVTEDVLTAISAVAAYLGNDGSAEVVHFAPSPNWVREGRRALQNHSIR\n>locus=Si_gnF\nMWFPVVLLLLVGVAVAMPDHEHAWEPQNEYQYSVFVRTLTGVDTLKQQYTGIQLKGVLVIQVKSEELLQAKYINPRYAHIHQELSNGPYSKIPEENLEYRDIPMSGKPFEIKLKHGVIRDLLFDRNVPTWEVNMLKGIVGQLQIDTQGENAIDSQSTQIPSNSEPSSATFKAMEDSVGGKCEVLYEITPLPQHVAQTRPDRVPMSSVPSKGHHYEVKKLKNYEKCQERQLYHYGMDVKMTKENMMKRNKVVSELSTTHIVITGTLKSFTIQSTEMKNEITVQPESSDSPIGTVYSITKLTLAKINKISNSWFGPLELSNVESTGNLVYIFNNPFSDSEQRRVGQPSISRNSEQENSLETKKRSFHSHSSSSSSSSSSSSEEENESVMQSKASLRNIFMAPNVPLLPYFIGFKGKTIMKSNEHNVMQLAKDLLLQIAKEIQNPSEGYENTLEKYVNLKNLIRTMDRKQYTELEQYVSQFNKATVEGENAWYTLRDAVVHAGTGPAFVTIENWLKSGQVKGEEAAELLSKIPKSVHQPTPDYIKEFFKLIKSSVVTQQEYVNVSAPLAFAELLRNNYVVPSYYPVHSFGRMTLKGNEEIDNYISYLANQLQQGYLENNTQKIQTFIFALGVTAHPKIISVFEPYLEGKLPTTKYQRMLMVAALYDLSRDIPKLVGPIFYKLYMNENEAHEVRCMAVQQFILTDPPMITLQRVAKYTNYDQSDQVNSAVKSTLNSIINTKRPEWRNLANKARSVRYLVNPKNYDTWYSKGYYIDFENWVFKGLNVKMVASNDAVLPRYVYVGLDSIFNFLRKPTFEVGYAVSSYRQVYDLINELWNSYQFEEMREKSQGSRVEKLAQELKIKSGQKNNLEGHVLFNSVYGSMVYPYDKHRIREAVAALKKLLTSDSKLKTTAFNNFEKIVSFPMEMGVPFVYSFELPVFVKSEINFKKGEPITSRSGVYETLFCNRVQKRFGFIAPFEYQNYIAGIDKNGIMRVPLKYETNIDIKQKNFALKIHPNIPQSGTSTGLTHYSVVPFTTRQNIFNLQPVSNEGNTRPVITSEIHKMTKEKGPFSIKIESDTTKKESVLEDIVTGISKSSNSNNERYMKIDTTFESKQVAKCEIQIDMTFDAVTIHGKNQQPSHKEMQHHSKLDWKPNSKERREEIVNVLSAGLKSGTVFVADVSFSLPRLQDNTYVFTVGSVRSNIDQKLRHYFYVNTNAAQEVKYELCYSQEVQYAYPTPLNFEYAINNEPKDKLKGVLRYGRTCNTGNEIVITGSSSQSPQLRDMIENSSITKQCMEEIQKGKKSVRTCNKATDVAQVRDQLNFHIDASQLSEIRQKYDQVIGLLNYTNLSQYNVQQNSETNTIVVQNPWVMVPTVQEPWYRWAIKPSESQRQSEIDVLLDEVSQPSCTLDNDKILTFDNQLYNVQLGKCKHVLLTTYPQDSHNRRNYIPESSKVAVLAKDTDNDSRNVYVWLGNLEIELKKVGNDLKVAINGQNVEIPEKGHQESNGNEIIFEIVQLPDGSLSVISEKYGITVIFDGKHVRLYANGATYRNAIRGLCGNYDSRRDNDFLTPKNCLLTKPEEFAATYAMTNENCQGPAPENKRKAEGAMCIEVPEQQQMNVISDREAGRMMTEGGNWGYHQSNRKKEHGQDSKRGHGHKKYNQKDSQEGGSNESQYRKKHNIVYRTRVVEMDDKICFTTTPVPGCLQDTRPVERVPKKYDLYCLSKNNESMDLKRRVEEGAKPDFTQKPVNKIQNFQIPVSCSAA";"dna"===G?document.getElementById("seq").value=T:"protein"===G&&(document.getElementById("seq").value=A)}function checkType(G,T,A,e){"use strict";void 0===T&&(T=.9),void 0===A&&(A=1e4),void 0===e&&(e=1);var C=G.slice(e-1,A),t=C.replace(/N/gi,""),a=t.length,n=(t.match(/[ACG]/gi)||[]).length/a,r=(t.match(/[T]/gi)||[]).length/a,V=(t.match(/[U]/gi)||[]).length/a,s=C.replace(/X/gi,""),S=s.length,i=(C.match(/[ARNDCQEGHILKMFPSTWYV\*]/gi)||[]).length/S;return n+r>=T||n+V>=T?r>=V?"dna":V>=r?"rna":"dna":i>=T?"protein":void 0}$(document).ready(function(){"use strict";checkCollapseState(),keepFooterFixedToBottom(),addSeqValidation(),inputValidation(),$(document).bind("keydown",function(G){G.ctrlKey&&13===G.keyCode&&$("#input").trigger("submit")})});