Sha256: 2d228b026cdc7661eec0b4e7d23eb31d7174e928efdb87d0ecbb1ba72ba76707
Contents?: true
Size: 1.13 KB
Versions: 22
Compression:
Stored size: 1.13 KB
Contents
import org.junit.Test
import static org.junit.Assert.assertEquals
class HammingTest {
@Test
void testIdenticalStrands() {
assertEquals 0, new Hamming().compute('A','A')
}
@Test
void testCompleteDistanceForSingleNucleotideStrand() {
assertEquals 1, new Hamming().compute('A','G')
}
@Test
void testCompleteDistanceForSmallStrand() {
assertEquals 2, new Hamming().compute('AG','CT')
}
@Test
void testSmallHammingDistance() {
assertEquals 1, new Hamming().compute('AT','CT')
}
@Test
void testSmallHammingDistanceInLongerStrand() {
assertEquals 1, new Hamming().compute('GGACG','GGTCG')
}
@Test
void testIgnoreLengthOnFirstStrandWhenLonger() {
assertEquals 1, new Hamming().compute('AGAGACTTA','AAA')
}
@Test
void testIgnoreLengthOnOtherStrandWhenLonger() {
assertEquals 2, new Hamming().compute('AGG','AAAACTGACCCACCCCAGG')
}
@Test
void testLargeHammingDistance() {
assertEquals 4, new Hamming().compute('GATACA','GCATAA')
}
@Test
void testVeryLongHammingDistance() {
assertEquals 9, new Hamming().compute('GGACGGATTCTG','AGGACGGATTCT')
}
}
Version data entries
22 entries across 22 versions & 1 rubygems