Sha256: 2d1359bd8f6c29904697bdb8efe17e75952ce7a95a070e8b56b046524b069712
Contents?: true
Size: 706 Bytes
Versions: 13
Compression:
Stored size: 706 Bytes
Contents
##
# IDENTIFY CLUSTERS IN A TAXCOLLECTOR DATABASE
#
module Lederhosen
class CLI
desc "name",
"identify representative reads in a TaxCollector database using BLAT"
method_option :reps, :type => :string, :required => true
method_option :database, :type => :string, :required => true
method_option :output, :type => :string, :required => true
def name
reps = options[:reps]
database = options[:database]
output = options[:output]
# run blat/blast
cmd = [
'blat',
database,
reps,
'-t=dna',
'-q=dna',
'-out=blast8',
output
]
exec cmd.join(' ')
end
end
end
Version data entries
13 entries across 13 versions & 1 rubygems