Class: DuplicationValidationOutput

Inherits:

ValidationReport

• Object
• ValidationReport
• DuplicationValidationOutput

show all

Defined in:

lib/genevalidator/validation_duplication.rb

Overview

Instance Attribute Summary (collapse)

• - (Object) pvalue readonly

  Returns the value of attribute pvalue.

• - (Object) threshold readonly

  Returns the value of attribute threshold.

Attributes inherited from ValidationReport

#bg_color, #errors, #expected, #message, #plot_files, #result, #validation_result

Instance Method Summary (collapse)

• - (Object) color
• - (DuplicationValidationOutput) initialize(pvalue, threshold = 0.05, expected = :no) constructor

  A new instance of DuplicationValidationOutput.

• - (Object) print
• - (Object) validation

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# File 'lib/genevalidator/validation_duplication.rb', line 11

def initialize (pvalue, threshold = 0.05, expected = :no)
  @pvalue    = pvalue
  @threshold = threshold
  @result    = validation
  @expected  = expected
end

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# File 'lib/genevalidator/validation_duplication.rb', line 8

def pvalue
  @pvalue
end

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# File 'lib/genevalidator/validation_duplication.rb', line 9

def threshold
  @threshold
end

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# File 'lib/genevalidator/validation_duplication.rb', line 30

def color
  if validation == :no
    "success"
  else
    "danger"
  end
end

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# File 'lib/genevalidator/validation_duplication.rb', line 18

def print
  "pval=#{@pvalue.round(2)}"
end

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# File 'lib/genevalidator/validation_duplication.rb', line 22

def validation
  if @pvalue < @threshold
    :yes
  else
    :no
  end
end