Contents

= mspire 

mspire - 'Mass Spectrometry Proteomics in Ruby' is a collection of tools for
working with MS proteomics data in ruby.  It seeks to provide support for open
standards (e.g., parsers for mzData, mzXML, Peptide/Protein Prophet and the
TPP) and contribute other useful functionality for working with mass
spectrometry data in ruby.

== Current Focus

The project is currently focusing on the following:

* SEQUEST data (particularly the output of Bioworks 3.2)
* mzXML 
* ProteinProphet
* Preparation of files for obiwarp[http://obi-warp.sourceforge.net/]

== Database Searching Tutorial

This tutorial[link:files/tutorial/database_searching.html] demonstrates two
methods for running and analysing Bioworks output to obtain false positive
rates using mspire executables.

== Installation

see INSTALL[link:files/INSTALL.html]

Version data entries

1 entries across 1 versions & 1 rubygems

Version	Path
mspire-0.1.3	README