Sha256: 2407924f001767c6a543375845e4afc01b23a74c9cc3dd634c41e3df29e1f9db
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Size: 949 Bytes
Versions: 21
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Stored size: 949 Bytes
Contents
module SequenceServer
# Define BLAST::HSP and BLAST::HSP::*.
module BLAST
# Structure to hold data for each HSP.
HSP = Struct.new(:hit, :number, :bit_score, :score, :evalue, :qstart, :qend,
:sstart, :send, :qframe, :sframe, :identity, :positives,
:gaps, :length, :qcovhsp, :qseq, :sseq, :midline) do
INTEGER_ARGS = [1, 3].concat((5..15).to_a).freeze
FLOAT_ARGS = [2, 4].freeze
def initialize(*args)
INTEGER_ARGS.each do |i|
args[i] = args[i].to_i
end
FLOAT_ARGS.each do |i|
args[i] = args[i].to_f
end
super
end
def to_json(*args)
%i[number bit_score score evalue qstart qend
sstart send qframe sframe identity positives
gaps length qcovhsp qseq sseq midline].inject({}) { |h, k|
h[k] = self[k]
h
}.to_json(*args)
end
end
end
end
Version data entries
21 entries across 21 versions & 1 rubygems