Sha256: 2380d8cc9184ab944fc63897f7ed2eb28c748551e5cb0fcfdd614e5d243fbe3b
Contents?: true
Size: 1.11 KB
Versions: 39
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Stored size: 1.11 KB
Contents
require 'rbbt-util'
require 'rbbt/resource'
module PhosphoSitePlus
extend Resource
self.subdir = 'share/databases/PhosphoSitePlus'
def self.organism(org="Hsa")
require 'rbbt/sources/organism'
Organism.default_code(org)
end
#self.search_paths = {}
#self.search_paths[:default] = :lib
#self.search_paths = {}
#self.search_paths[:default] = :lib
ALL_FILES = %w(Acetylation_site_dataset.gz Disease-associated_sites.gz
Kinase_Substrate_Dataset.gz Methylation_site_dataset.gz
O-GalNAc_site_dataset.gz O-GlcNAc_site_dataset.gz
Phosphorylation_site_dataset.gz Phosphosite_PTM_seq.fasta.gz
Phosphosite_seq.fasta.gz Regulatory_sites.gz Sumoylation_site_dataset.gz
Ubiquitination_site_dataset.gz)
ALL_FILES.each do |file|
PhosphoSitePlus.claim PhosphoSitePlus[".source"][file], :proc do |f|
raise "Place #{file} from http://www.phosphosite.org/ at #{f}. Please consult license."
end
end
PhosphoSitePlus.claim PhosphoSitePlus.kinase_substrate, :proc do
PhosphoSitePlus[".source/Kinase_Substrate_Dataset.gz"].produce
end
end
iif PhosphoSitePlus.data.produce.find if __FILE__ == $0
Version data entries
39 entries across 39 versions & 1 rubygems