Sha256: 233f5a43ce665d4c22a0bf5471759fd6b767acd99bff82ddf1865b110c6c3f02
Contents?: true
Size: 900 Bytes
Versions: 5
Compression:
Stored size: 900 Bytes
Contents
#
# = bio/db/gff/gffdb.rb - GFF database class
#
# Copyright:: Copyright (C) 2010
# Pjotr Prins <pjotr.prins@thebird.nl>
# License:: The Ruby License
# Create db from a GFF file
require 'bio'
require 'bio/db/gff/gfffileiterator'
require 'bio/db/gff/gfffasta'
require 'bio/db/gff/gffassemble'
require 'bio/db/gff/gffparser'
require 'bio/db/gff/gffinmemory'
require 'bio/db/gff/gffnocache'
module Bio
module GFFbrowser
class GFFdb
attr_reader :assembler
include Digest
# Initialize a GFF parser
def initialize filename, options = {}
cache_recs = options[:cache_records]
@assembler =
case cache_recs
when :cache_none
NoCache.new(filename, options)
else
InMemory.new(filename, options) # default
end
end
end # GFFdb
end # GFFbrowser
end # Bio
Version data entries
5 entries across 5 versions & 1 rubygems