Sha256: 22b0eebb2e0a9e46bd0a8dc81d8e935245cece5b5fcb14ce1e297de11dc95cdd
Contents?: true
Size: 835 Bytes
Versions: 10
Compression:
Stored size: 835 Bytes
Contents
module SequenceServer
# Define BLAST::Query.
module BLAST
# Capture results per query of a BLAST search.
# @member [String] number
# @member [String] def
# @member [Fixnum] length
# @member [Array(Hit)] hits
Query = Struct.new(:report, :number, :def, :length, :hits) do
def initialize(*args)
args[1] = args[1].to_i
if args[2] == 'No definition line' ||
args[2] == 'unnamed protein product'
args[2] = "Query_#{args[1]}"
end
args[3] = args[3].to_i
@id, *rest = args[2].split
@title = rest.join(' ')
super
end
attr_reader :id, :title
def to_json(*args)
[:number, :id, :title, :length, :hits]
.inject({}) { |h, k| h[k] = send(k); h }.to_json(*args)
end
end
end
end
Version data entries
10 entries across 10 versions & 1 rubygems