seqfile = abglobin.aa
treefile = abglobin.trees
outfile = output.txt
clock = 0
ncatG = 8
noisy = 0
fix_omega = 0
aaDist = 0
fix_kappa = 1
getSE = 0
runmode = 0
omega = 0.4
aaRatefile = wag.dat
method = 0
seqtype = 2
NSsites = 0
fix_alpha = 0
RateAncestor = 1
verbose = 1
icode = 0
model = 1
alpha = 0.5
Small_Diff = 5.0e-06
CodonFreq = 2
cleandata = 1
ndata = 1
Mgene = 0
kappa = 2
Malpha = 0
fix_blength = 0