--- !ruby/object:Gem::Specification 
rubygems_version: 0.9.0
specification_version: 1
name: mspire
version: !ruby/object:Gem::Version 
  version: 0.1.3
date: 2006-10-03 00:00:00 -05:00
summary: Mass Spectrometry Proteomics Objects, Scripts, and Executables
require_paths: 
- lib
email: 
homepage: 
rubyforge_project: 
description: 
autorequire: 
default_executable: 
bindir: 
- bin
has_rdoc: true
required_ruby_version: !ruby/object:Gem::Version::Requirement 
  requirements: 
  - - ">"
    - !ruby/object:Gem::Version 
      version: 0.0.0
  version: 
platform: ruby
signing_key: 
cert_chain: 
post_install_message: 
authors: []

files: 
- INSTALL
- README
- Rantfile
- LICENSE
- test/tfiles
- test/tc_false_positive_rate.rb
- test/tc_proph.rb
- test/tc_sequest.rb
- test/tc_align.rb
- test/tc_spec.rb
- test/load_lib_path.rb
- test/tc_protein_summary.rb
- test/load_bin_path.rb
- test/tc_fasta.rb
- test/tc_bioworks.rb
- test/tc_peptide_parent_times.rb
- test/tc_msrun.rb
- test/tc_spec_id.rb
- test/tc_mzxml.rb
- test/tc_id_precision.rb
- test/tc_id_class_anal.rb
- test/tc_gi2annot.rb
- test/tc_scan.rb
- test/tc_bioworks_to_pepxml.rb
- test/tc_filter_peps.rb
- test/tc_hash_by.rb
- test/tc_roc.rb
- test/tc_mzxml_to_lmat.rb
- test/tfiles/yeast_gly_mzXML
- test/tfiles/4-03-03_mzXML
- test/tfiles/opd1
- test/tfiles/bioworks_single_run_small.xml
- test/tfiles/tf_bioworks2excel.txt.actual
- test/tfiles/pepproph_small.xml
- test/tfiles/000_pepxml18_small.xml
- test/tfiles/tf_bioworks2excel.bioXML
- test/tfiles/bioworks31.params
- test/tfiles/bioworks_small.xml
- test/tfiles/bioworks32.params
- test/tfiles/yeast_gly_small.xml
- test/tfiles/4-03-03_small.xml
- test/tfiles/messups.fasta
- test/tfiles/bioworks_with_INV_small.xml
- test/tfiles/020a.mzXML.timeIndex
- test/tfiles/bioworks.xml
- test/tfiles/yeast_gly_small2.parentTimes
- test/tfiles/small.fasta
- test/tfiles/yeast_gly_small-prot.xml
- test/tfiles/smallraw.RAW
- test/tfiles/yeast_gly_small.1.0_1.0_1.0.parentTimes
- test/tfiles/bioworks_with_SHUFF_small.xml
- test/tfiles/4-03-03_small-prot.xml
- test/tfiles/yeast_gly_mzXML/000.mzXML
- test/tfiles/yeast_gly_mzXML/020.mzXML
- test/tfiles/4-03-03_mzXML/000.mzXML.timeIndex
- test/tfiles/4-03-03_mzXML/020.mzXML.timeIndex
- test/tfiles/opd1/opd1_cat_inv_small-prot.xml
- test/tfiles/opd1/000.v2.1.mzXML.timeIndex
- test/tfiles/opd1/000.tpp_2.9.2.first10.xml
- test/tfiles/opd1/000_020-prot.png
- test/tfiles/opd1/twenty_scans.mzXML
- test/tfiles/opd1/000.mzXML.timeIndex
- test/tfiles/opd1/000.my_answer.100lines.xml
- test/tfiles/opd1/000_020-prot.xml
- test/tfiles/opd1/twenty_scans_answ.lmat
- test/tfiles/opd1/twenty_scans_answ.lmata
- test/tfiles/opd1/000.tpp_1.2.3.first10.xml
- test/tfiles/opd1/sequest.3.1.params
- test/tfiles/opd1/000_020_3prots-prot.xml
- test/tfiles/opd1/twenty_scans.v2.1.mzXML
- test/tfiles/opd1/sequest.3.2.params
- test/tfiles/opd1/bioworks.000.oldparams.xml
- test/tfiles/opd1/opd1_cat_inv_small-prot.summary.toplot
- test/tfiles/opd1/opd1_cat_inv_small-prot.summary.png
- test/tfiles/opd1/opd1_cat_inv_small-prot.summary.html
- bin/fasta_cat_mod.rb
- bin/fasta_mod.rb
- bin/gi2annot.rb
- bin/protein_summary.rb
- bin/raw2mzXML.rb
- bin/fasta_cat.rb
- bin/bioworks2sequestXML_gui.rb
- bin/bioworks2excel.rb
- bin/pepproph_filter.rb
- bin/bioworks_to_pepxml.rb
- bin/protxml2prots_peps.rb
- bin/false_positive_rate.rb
- bin/id_precision.rb
- bin/id_class_anal.rb
- bin/mzxml_to_lmat.rb
- script/create_little_pepxml.rb
- script/mzXML2timeIndex.rb
- script/tpp_installer.rb
- script/msvis.rb
- script/histogram_probs.rb
- script/prep_dir.rb
- script/filter-peps.rb
- tutorial/database_searching
- tutorial/gen_database_searching.rb
- tutorial/two_db_search
- tutorial/cat_db_search
- lib/spec_id
- lib/align
- lib/spec
- lib/spec_id.rb
- lib/fasta.rb
- lib/sample_enzyme.rb
- lib/align.rb
- lib/hash_by.rb
- lib/roc.rb
- lib/spec_id/bioworks.rb
- lib/spec_id/proph.rb
- lib/spec_id/sequest.rb
- lib/spec_id/false_positive_rate.rb
- lib/align/chams.rb
- lib/spec/mzxml
- lib/spec/msrun.rb
- lib/spec/scan.rb
- lib/spec/mzxml.rb
- lib/spec/mzxml/parser.rb
test_files: 
- test/tc_false_positive_rate.rb
- test/tc_proph.rb
- test/tc_sequest.rb
- test/tc_align.rb
- test/tc_spec.rb
- test/tc_protein_summary.rb
- test/tc_fasta.rb
- test/tc_bioworks.rb
- test/tc_peptide_parent_times.rb
- test/tc_msrun.rb
- test/tc_spec_id.rb
- test/tc_mzxml.rb
- test/tc_id_precision.rb
- test/tc_id_class_anal.rb
- test/tc_gi2annot.rb
- test/tc_scan.rb
- test/tc_bioworks_to_pepxml.rb
- test/tc_filter_peps.rb
- test/tc_hash_by.rb
- test/tc_roc.rb
- test/tc_mzxml_to_lmat.rb
rdoc_options: 
- --title
- mspire
- --main
- README
- README
- INSTALL
- tutorial/database_searching
- tutorial/gen_database_searching.rb
- tutorial/two_db_search
- tutorial/cat_db_search
extra_rdoc_files: []

executables: 
- fasta_cat_mod.rb
- fasta_mod.rb
- gi2annot.rb
- protein_summary.rb
- raw2mzXML.rb
- fasta_cat.rb
- bioworks2sequestXML_gui.rb
- bioworks2excel.rb
- pepproph_filter.rb
- bioworks_to_pepxml.rb
- protxml2prots_peps.rb
- false_positive_rate.rb
- id_precision.rb
- id_class_anal.rb
- mzxml_to_lmat.rb
extensions: []

requirements: []

dependencies: []