#encoding: utf-8 require 'csv' require_relative '../../lib/rgraph/link' require_relative '../../lib/rgraph/node' class Graph attr_accessor :nodes, :links, :infinity def initialize(csv) @nodes = [] @links = [] @distance = nil @infinity = 100_000 raise Exception.new("the file must be a .csv") unless File.extname(csv) == ".csv" CSV.foreach(csv, headers: true) do |row| #last because CSV#delete returns [column,value] source_id = row.delete('source').last target_id = row.delete('target').last source = get_node_by_id(source_id) || Node.new(id: source_id) target = get_node_by_id(target_id) || Node.new(id: target_id) maybe_add_to_nodes(source, target) @links << Link.new(source: source, target: target, weight: row['weight'], year: row['year']) end end def each_node(&block) @nodes.each(&block) end def each_link(&block) @links.each(&block) end def degrees @nodes.map{|node| node.degree} end def average_degree degrees.inject(:+) / @nodes.size.to_f end def cumulative_degree cached_degrees = degrees out = [] 0.upto(degrees.max - 1) do |i| out[i] = cached_degrees.select{|degree| degree > i}.count end out.map{|a| a / out.max.to_f} end def idistance dist = Array.new(@nodes.size) { Array.new(@nodes.size, 0) } @nodes.sort{|a,b| a.id <=> b.id}.each_with_index do |n1, i| @nodes.sort{|a,b| a.id <=> b.id}.each_with_index do |n2, j| if i != j dist[i][j] = n1.neighbours.include?(n2) ? @links.select{ |link| (link.source == n1 || link.source == n2) && (link.target == n1 || link.target == n2) }.first.weight.to_i : @infinity end end end dist end def distances @path = Array.new(@nodes.size) { Array.new(@nodes.size, nil) } @distance = idistance @distance.each_index do |k| @distance.each_index do |i| @distance.each_index do |j| new_dist = @distance[i][k] + @distance[k][j] if @distance[i][j] > new_dist @distance[i][j] = new_dist @path[i][j] = k end end end end @distance end def shortest_paths tmp = [] distances unless @my_shortest_paths 0.upto(@nodes.size - 1).each do |i| i.upto(@nodes.size - 1).each do |j| next if i == j sp = shortest_path(i, j) tmp << sp if sp end end @shortest_paths = tmp end def shortest_path(i, j) return [] if @distance[i][j] == @infinity k = @path[i][j] case k when @infinity [] when nil [i,j] else #We need to do this or k will appear three times shortest_path(i, k)[0..-2] + [k] + shortest_path(k, j)[1..-1] end end def between(i) shortest_paths unless @shortest_paths n = @shortest_paths.select{|c| c[1..-2].include?(i)}.size.to_f m = @shortest_paths.size.to_f n / m end def betweenness(normalized = false) bts = 0.upto(@nodes.size - 1).map { |i| between(i) } if normalized max = bts.max min = bts.min bts.map{|bt| (bt - min) / (max - min)} else bts end end def diameter distances unless @distance (distances.flatten - [@infinity]).max end private def get_node_by_id(node_id) @nodes.select{|n| n.id == node_id}.first end def maybe_add_to_nodes(*nodes) nodes.each do |node| @nodes << node unless get_node_by_id(node.id) end end end