Contents

require 'types'

module NcRna
	
	def find_nc_rna(seq, blast_query)
		
		# used to detect if the sequence and the blast are from different query
		if seq.seq_name != blast_query.query_def
			raise "BLAST query name and sequence are different"
		end
		
		hit=blast_query.hits.first
		
		if !hit.nil? && hit.align_len >= 40 # There is match in blast and it has a good length.
			seq.hit = hit
			seq.type = NCRNA
		end
	end
end

Version data entries

14 entries across 14 versions & 1 rubygems

Version	Path
full_lengther_next-1.0.6	lib/full_lengther_next/nc_rna.rb
full_lengther_next-1.0.5	lib/full_lengther_next/nc_rna.rb
full_lengther_next-1.0.4	lib/full_lengther_next/nc_rna.rb
full_lengther_next-1.0.3	lib/full_lengther_next/nc_rna.rb
full_lengther_next-1.0.2	lib/full_lengther_next/nc_rna.rb
full_lengther_next-1.0.1	lib/full_lengther_next/nc_rna.rb
full_lengther_next-1.0.0	lib/full_lengther_next/nc_rna.rb
full_lengther_next-0.9.9	lib/full_lengther_next/nc_rna.rb
full_lengther_next-0.9.8	lib/full_lengther_next/nc_rna.rb
full_lengther_next-0.6.2	lib/full_lengther_next/classes/nc_rna.rb
full_lengther_next-0.6.1	lib/full_lengther_next/classes/nc_rna.rb
full_lengther_next-0.6.0	lib/full_lengther_next/classes/nc_rna.rb
full_lengther_next-0.5.7	lib/full_lengther_next/classes/nc_rna.rb
full_lengther_next-0.5.6	lib/full_lengther_next/classes/nc_rna.rb