--- !ruby/object:Gem::Specification
name: mspire
version: !ruby/object:Gem::Version
  version: 0.6.25
  prerelease: 
platform: ruby
authors:
- John T. Prince
- Simon Chiang
autorequire: 
bindir: bin
cert_chain: []
date: 2012-03-13 00:00:00.000000000 Z
dependencies:
- !ruby/object:Gem::Dependency
  name: nokogiri
  requirement: &13676060 !ruby/object:Gem::Requirement
    none: false
    requirements:
    - - ~>
      - !ruby/object:Gem::Version
        version: '1.5'
  type: :runtime
  prerelease: false
  version_requirements: *13676060
- !ruby/object:Gem::Dependency
  name: bsearch
  requirement: &13674700 !ruby/object:Gem::Requirement
    none: false
    requirements:
    - - ! '>='
      - !ruby/object:Gem::Version
        version: 1.5.0
  type: :runtime
  prerelease: false
  version_requirements: *13674700
- !ruby/object:Gem::Dependency
  name: andand
  requirement: &13673200 !ruby/object:Gem::Requirement
    none: false
    requirements:
    - - ! '>='
      - !ruby/object:Gem::Version
        version: 1.3.1
  type: :runtime
  prerelease: false
  version_requirements: *13673200
- !ruby/object:Gem::Dependency
  name: obo
  requirement: &13672440 !ruby/object:Gem::Requirement
    none: false
    requirements:
    - - ! '>='
      - !ruby/object:Gem::Version
        version: 0.1.0
  type: :runtime
  prerelease: false
  version_requirements: *13672440
- !ruby/object:Gem::Dependency
  name: builder
  requirement: &13671860 !ruby/object:Gem::Requirement
    none: false
    requirements:
    - - ! '>='
      - !ruby/object:Gem::Version
        version: 3.0.0
  type: :runtime
  prerelease: false
  version_requirements: *13671860
- !ruby/object:Gem::Dependency
  name: trollop
  requirement: &13687020 !ruby/object:Gem::Requirement
    none: false
    requirements:
    - - ! '>='
      - !ruby/object:Gem::Version
        version: 1.16.2
  type: :runtime
  prerelease: false
  version_requirements: *13687020
- !ruby/object:Gem::Dependency
  name: rspec
  requirement: &13685880 !ruby/object:Gem::Requirement
    none: false
    requirements:
    - - ~>
      - !ruby/object:Gem::Version
        version: '2.6'
  type: :development
  prerelease: false
  version_requirements: *13685880
- !ruby/object:Gem::Dependency
  name: jeweler
  requirement: &13684660 !ruby/object:Gem::Requirement
    none: false
    requirements:
    - - ~>
      - !ruby/object:Gem::Version
        version: 1.5.2
  type: :development
  prerelease: false
  version_requirements: *13684660
- !ruby/object:Gem::Dependency
  name: rcov
  requirement: &13683500 !ruby/object:Gem::Requirement
    none: false
    requirements:
    - - ! '>='
      - !ruby/object:Gem::Version
        version: '0'
  type: :development
  prerelease: false
  version_requirements: *13683500
description: mass spectrometry proteomics, lipidomics, and tools, a rewrite of mspire,
  merging of ms-* gems
email: jtprince@gmail.com
executables: []
extensions: []
extra_rdoc_files:
- LICENSE
- README.rdoc
files:
- LICENSE
- README.rdoc
- Rakefile
- VERSION
- lib/bin.rb
- lib/core_ext/array/in_groups.rb
- lib/cv.rb
- lib/cv/param.rb
- lib/cv/referenceable_param_group_ref.rb
- lib/io/bookmark.rb
- lib/merge.rb
- lib/ms.rb
- lib/ms/cv.rb
- lib/ms/cv/param.rb
- lib/ms/cv/paramable.rb
- lib/ms/digester.rb
- lib/ms/error_rate/decoy.rb
- lib/ms/error_rate/qvalue.rb
- lib/ms/fasta.rb
- lib/ms/ident.rb
- lib/ms/ident/peptide.rb
- lib/ms/ident/peptide/db.rb
- lib/ms/ident/peptide_hit.rb
- lib/ms/ident/peptide_hit/qvalue.rb
- lib/ms/ident/pepxml.rb
- lib/ms/ident/pepxml/modifications.rb
- lib/ms/ident/pepxml/msms_pipeline_analysis.rb
- lib/ms/ident/pepxml/msms_run_summary.rb
- lib/ms/ident/pepxml/parameters.rb
- lib/ms/ident/pepxml/sample_enzyme.rb
- lib/ms/ident/pepxml/search_database.rb
- lib/ms/ident/pepxml/search_hit.rb
- lib/ms/ident/pepxml/search_hit/modification_info.rb
- lib/ms/ident/pepxml/search_result.rb
- lib/ms/ident/pepxml/search_summary.rb
- lib/ms/ident/pepxml/spectrum_query.rb
- lib/ms/ident/protein.rb
- lib/ms/ident/protein_group.rb
- lib/ms/ident/search.rb
- lib/ms/isotope.rb
- lib/ms/isotope/aa.rb
- lib/ms/isotope/distribution.rb
- lib/ms/isotope/nist_isotope_info.yml
- lib/ms/mascot.rb
- lib/ms/mass.rb
- lib/ms/mass/aa.rb
- lib/ms/molecular_formula.rb
- lib/ms/mzml.rb
- lib/ms/mzml/activation.rb
- lib/ms/mzml/chromatogram.rb
- lib/ms/mzml/chromatogram_list.rb
- lib/ms/mzml/component.rb
- lib/ms/mzml/contact.rb
- lib/ms/mzml/cv.rb
- lib/ms/mzml/data_array.rb
- lib/ms/mzml/data_array_container_like.rb
- lib/ms/mzml/data_processing.rb
- lib/ms/mzml/file_content.rb
- lib/ms/mzml/file_description.rb
- lib/ms/mzml/index_list.rb
- lib/ms/mzml/instrument_configuration.rb
- lib/ms/mzml/isolation_window.rb
- lib/ms/mzml/list.rb
- lib/ms/mzml/plms1.rb
- lib/ms/mzml/precursor.rb
- lib/ms/mzml/processing_method.rb
- lib/ms/mzml/product.rb
- lib/ms/mzml/referenceable_param_group.rb
- lib/ms/mzml/run.rb
- lib/ms/mzml/sample.rb
- lib/ms/mzml/scan.rb
- lib/ms/mzml/scan_list.rb
- lib/ms/mzml/scan_settings.rb
- lib/ms/mzml/selected_ion.rb
- lib/ms/mzml/software.rb
- lib/ms/mzml/source_file.rb
- lib/ms/mzml/spectrum.rb
- lib/ms/mzml/spectrum_list.rb
- lib/ms/obo.rb
- lib/ms/peak.rb
- lib/ms/peak/point.rb
- lib/ms/plms1.rb
- lib/ms/quant/qspec.rb
- lib/ms/quant/qspec/protein_group_comparison.rb
- lib/ms/spectrum.rb
- lib/ms/spectrum/centroid.rb
- lib/ms/spectrum_like.rb
- lib/ms/user_param.rb
- lib/mspire.rb
- lib/obo/ims.rb
- lib/obo/ms.rb
- lib/obo/ontology.rb
- lib/obo/unit.rb
- lib/openany.rb
- lib/write_file_or_string.rb
- mspire.gemspec
- obo/ims.obo
- obo/ms.obo
- obo/unit.obo
- script/mzml_read_binary.rb
- spec/bin_spec.rb
- spec/ms/cv/param_spec.rb
- spec/ms/digester_spec.rb
- spec/ms/error_rate/qvalue_spec.rb
- spec/ms/fasta_spec.rb
- spec/ms/ident/peptide/db_spec.rb
- spec/ms/ident/pepxml/sample_enzyme_spec.rb
- spec/ms/ident/pepxml/search_hit/modification_info_spec.rb
- spec/ms/ident/pepxml_spec.rb
- spec/ms/ident/protein_group_spec.rb
- spec/ms/isotope/aa_spec.rb
- spec/ms/isotope/distribution_spec.rb
- spec/ms/isotope_spec.rb
- spec/ms/mass_spec.rb
- spec/ms/molecular_formula_spec.rb
- spec/ms/mzml/cv_spec.rb
- spec/ms/mzml/data_array_spec.rb
- spec/ms/mzml/file_content_spec.rb
- spec/ms/mzml/file_description_spec.rb
- spec/ms/mzml/index_list_spec.rb
- spec/ms/mzml/plms1_spec.rb
- spec/ms/mzml/referenceable_param_group_spec.rb
- spec/ms/mzml_spec.rb
- spec/ms/peak_spec.rb
- spec/ms/plms1_spec.rb
- spec/ms/quant/qspec_spec.rb
- spec/ms/spectrum_spec.rb
- spec/ms/user_param_spec.rb
- spec/mspire_spec.rb
- spec/obo_spec.rb
- spec/spec_helper.rb
- spec/testfiles/ms/ident/peptide/db/uni_11_sp_tr.fasta
- spec/testfiles/ms/ident/peptide/db/uni_11_sp_tr.msd_clvg2.min_aaseq4.yml
- spec/testfiles/ms/mzml/j24z.idx_comp.3.mzML
- spec/testfiles/ms/mzml/mspire_simulated.MSn.check.mzML
- spec/testfiles/ms/mzml/openms.noidx_nocomp.12.mzML
- spec/testfiles/ms/quant/kill_extra_tabs.rb
- spec/testfiles/ms/quant/max_quant_output.provenance.txt
- spec/testfiles/ms/quant/max_quant_output.txt
- spec/testfiles/ms/quant/pdcd5_final.killedextratabs.tsv
- spec/testfiles/ms/quant/pdcd5_final.killedextratabs.tsv_qspecgp
- spec/testfiles/ms/quant/pdcd5_final.killedextratabs.tsv_qspecgp.csv
- spec/testfiles/ms/quant/pdcd5_final.txt
- spec/testfiles/ms/quant/pdcd5_final.txt_qspecgp
- spec/testfiles/ms/quant/pdcd5_lfq_qspec.CSV.csv
- spec/testfiles/ms/quant/pdcd5_lfq_qspec.csv
- spec/testfiles/ms/quant/pdcd5_lfq_qspec.oneprot.csv
- spec/testfiles/ms/quant/pdcd5_lfq_qspec.oneprot.tsv
- spec/testfiles/ms/quant/pdcd5_lfq_qspec.oneprot.tsv_qspecgp
- spec/testfiles/ms/quant/pdcd5_lfq_qspec.oneprot.tsv_qspecgp.csv
- spec/testfiles/ms/quant/pdcd5_lfq_qspec.txt
- spec/testfiles/ms/quant/pdcd5_lfq_tabdel.txt
- spec/testfiles/ms/quant/pdcd5_lfq_tabdel.txt_qspecgp
- spec/testfiles/ms/quant/remove_rest_of_proteins.rb
- spec/testfiles/ms/quant/unlog_transform.rb
- spec/testfiles/plms1/output.key
homepage: http://github.com/princelab/mspire
licenses:
- MIT
post_install_message: 
rdoc_options: []
require_paths:
- lib
required_ruby_version: !ruby/object:Gem::Requirement
  none: false
  requirements:
  - - ! '>='
    - !ruby/object:Gem::Version
      version: '0'
required_rubygems_version: !ruby/object:Gem::Requirement
  none: false
  requirements:
  - - ! '>='
    - !ruby/object:Gem::Version
      version: '0'
requirements: []
rubyforge_project: 
rubygems_version: 1.8.15
signing_key: 
specification_version: 3
summary: mass spectrometry proteomics, lipidomics, and tools
test_files: []