Sha256: 11cd1d36c5cf253280a4a3299250786832fd198695a0c17cd1c4cd15f15a070c
Contents?: true
Size: 1.7 KB
Versions: 21
Compression:
Stored size: 1.7 KB
Contents
require 'rbbt/util/misc'
plural = Proc.new do |t| t.sub(/s$/,'') end
tokens do
# Some (possible) single letters first
receptor /^(?:receptor|r)s?$/i
protein /^(?:protein|p)s?$/i
roman /^[IV]+$/
greek_letter do |w| $inverse_greek[w.downcase] != nil end
# Some words for removal
stopword do |w| $stopwords.include?( w.downcase_first) end
gene /genes?/i
dna
cdna
rna
mrna
trna
cdna
component
exon
intron
domain
family
# Important words
number /^(?:\d+[.,]?\d+|\d)$/
greek do |w| $greek[w.downcase] != nil end
special do |w| w.is_special? end
promoter
similar /^(homolog.*|like|related|associated)$/
ase /ase$/
in_end /in$/
end
comparisons do
compare.number do |l1,l2|
v = 0
case
when l1.empty? && l2.empty?
v = 0
when l1.sort.uniq == l2.sort.uniq
v = 3
when l1.any? && l1[0] == l2[0]
v = -3
when l1.empty? && l2 == ['1']
v = -5
else
v = -10
end
v
end
diff.promoter -10
diff.receptor -10
diff.similar -10
diff.capital -10
same.unknown 1
miss.unknown -2
extr.unknown -2
same.greek 1
miss.greek -2
extr.greek -2
same.special 4
miss.special -3
extr.special -3
transform.receptor plural
transform.protein plural
transform.roman do |t| [t.arabic, :number] end
transform.greek_letter do |t| [$inverse_greek[t.downcase], :greek] end
transform.ase do |t| [t, :special] end
transform.in_end do |t| [t, :special] end
transform.unknown do |t| [t, (t.length < 4 ? :special : :unknown)] end
end
Version data entries
21 entries across 21 versions & 1 rubygems