Sha256: 1120813209bf44bec6fd5f73e7fe8afba6f50e92f08f9cdac7d3f7685de7971d
Contents?: true
Size: 606 Bytes
Versions: 39
Compression:
Stored size: 606 Bytes
Contents
module ArrayExpress
def self.tpm(code, organism = Organism.default_code("Hsa"))
url = "https://www.ebi.ac.uk/gxa/experiments-content/#{code}/resources/ExperimentDownloadSupplier.RnaSeqBaseline/tpms.tsv"
io = TSV.traverse Open.open(url), :type => :line, :into => :stream do |line|
next if line =~ /^#/
parts = line.split("\t")
line = parts[0] << "\t" << parts[2..-1] * "\t"
line = "#" + line if line =~ /Gene ID/
line
end
tsv = TSV.open(io, :type => :list, :cast => :to_f)
tsv.key_field = "Ensembl Gene ID"
tsv.namespace = organism
tsv
end
end
Version data entries
39 entries across 39 versions & 1 rubygems