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maf_to_fasta(1) -- convert MAF file to FASTA
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## SYNOPSIS
`maf_to_fasta` [<options>...] <maf> <fasta>
## DESCRIPTION
**maf_to_fasta**, part of the bioruby-maf library, converts Multiple
Alignment Format (MAF) files to FASTA format. It does not attempt to
combine alignment blocks, but simply writes out each sequence in
order.
## FILES
The <maf> input file must be a valid MAF file of any length.
The <fasta> output file will be written in FASTA format.
## OPTIONS
The options are only useful for performance measurement.
## EXAMPLES
Convert a MAF file to FASTA:
$ maf_to_fasta chrY.maf chrY.fa
## ENVIRONMENT
`maf_to_fasta` is a Ruby program and relies on ordinary Ruby
environment variables.
## BUGS
`maf_to_fasta` should provide flexibility in selecting the alignment
blocks and sequences to convert, and perhaps allow alignment blocks to
be spliced together.
## COPYRIGHT
`maf_to_fasta` is copyright (C) 2012 Clayton Wheeler.
## SEE ALSO
ruby(1)
* <https://github.com/csw/bioruby-maf/>
Version data entries
13 entries across 13 versions & 1 rubygems