Sha256: 0f1f1105ed9bc2d82df34c516cc4f83f618b2dc108dc68442c59bb9cd2414294
Contents?: true
Size: 1022 Bytes
Versions: 9
Compression:
Stored size: 1022 Bytes
Contents
def go_for_graph(sequences_by_ontologies, fpkm = {})
container = {}
go_data = [
[:function_go, 'F:'],
[:component_go, 'C:'],
[:process_go, 'P:']
]
go_data.each do |key, prefix|
go_ontology = sequences_by_ontologies.select{|go, seq_ids| go =~ /^#{prefix}/}
go_names = []
go_vals = []
go_ontology.each do |go_name, seq_names|
go_label = go_name.gsub(prefix, '')
if fpkm.empty?
go_vals << seq_names.length
go_names << go_label
else
sum = seq_names.map{|seq_name| fpkm[seq_name].first }.inject { |sum, n| sum + n }
if sum > 0
go_vals << sum
go_names << go_label
end
end
end
go_table = []
go_names.each_with_index do |name, index|
go_table << [name, go_vals[index]]
end
go_table.sort!{|v1, v2| v2[1] <=> v1[1]}
go_table.unshift([key.to_s, 'GO'])
if !go_names.empty?
container[key] = go_table
else
container[key] = [
[key.to_s, 'GO'],
['No_data', 1]
]
end
end
return container
end
Version data entries
9 entries across 9 versions & 1 rubygems