Sha256: 0cdce918b7e421ae4c38d9441c725434d171e547acdb20046a362c58e3d938ca
Contents?: true
Size: 859 Bytes
Versions: 8
Compression:
Stored size: 859 Bytes
Contents
require File.join(File.dirname(__FILE__),'../lib/rake_helper')
define_source_tasks "protein_chemicals" => "http://stitch.embl.de:8080/download/protein_chemical.links.v2.0.tsv.gz",
"chemicals" => "http://stitch.embl.de:8080/download/chemical.aliases.v2.0.tsv.gz"
process_tsv :protein_chemical, 'protein_chemicals',
:key => 1,
:grep => "9606\.",
:fix => lambda{|l| l.sub(/9606\./,'')},
:keep_empty => true do
headers ['Ensembl Protein ID', 'STITCH Chemical ID', 'Score']
end
$grep_re = []
process_tsv :chemicals, 'chemicals',
:grep => $grep_re,
:key => 0 do
Rake::Task['protein_chemical'].invoke
Log.debug "Getting chemicals"
chemicals = TSV.open('protein_chemical', :key_field => 1, :fields => []).keys
Log.debug "Getting chemicals [done]"
$grep_re.replace chemicals
headers ['STITCH Chemical ID', 'Name', 'Source']
end
Version data entries
8 entries across 8 versions & 2 rubygems