Contents

module GeneValidator
  # Exception raised when BLAST path is not added to the CLASSPATH
  class ClasspathError < Exception
  end

  # Exception raised when the command line type argument
  # does not corrsepond to the type of the sequences in the fasta file
  class SequenceTypeError < Exception
  end

  # Exception raised when an unexisting file is accessed
  class FileNotFoundException < Exception
  end

  # Exception raised when blast does not find any hit
  class QueryError < Exception
  end

  # Exception raised when a validation class is not instance of ValidationTest
  class ValidationClassError < Exception
  end

  # Exception raised when a validation report class is not instance of ValidationReport
  class ReportClassError < Exception
  end

  # Exception raised when there are not enough blast hits to make a statisticl validation
  class NotEnoughHitsError < Exception
  end

  # Exception raised when function dependig on the internet connection raise Exception
  class NoInternetError < Exception
  end

  # Exception raised when the alignment initialization raises exception
  class NoMafftInstallationError < Exception
  end

  # Exception raised when the -v argument didn't filter any validatio test
  class NoValidationError < Exception
  end

  # Exception raised when the are alias duplications
  class AliasDuplicationError < Exception
  end

  # Exception raised when the are alias duplications
  class NoPIdentError < Exception
  end

  # Exception raised when the tabular format does not correspond to the tabular argumet
  class InconsistentTabularFormat < Exception
  end

  # Exception raised when there are more than one reading frame among the hits of one prediction
  class ReadingFrameError < Exception
  end

  class OtherError < Exception
  end
end

Version data entries

3 entries across 3 versions & 1 rubygems

Version	Path
genevalidator-1.6.1	lib/genevalidator/exceptions.rb
genevalidator-1.6.0	lib/genevalidator/exceptions.rb
genevalidator-1.5.6	lib/genevalidator/exceptions.rb