Sha256: 004d95b07be82434dd3ca91f6025cb520264f9d874aa88665a730ab3f5fd8bb7

Contents?: true

Size: 1.76 KB

Versions: 5

Compression:

Stored size: 1.76 KB

Contents

Thu Apr 17 13:20:41 2014
 /srv/whitlam/home/users/uqbwoodc/git/bioruby-velvet_underground/ext/src/velveth Assem 31 -short -fasta Sequences
Version 1.2.10
Copyright 2007, 2008 Daniel Zerbino (zerbino@ebi.ac.uk)
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
Compilation settings:
CATEGORIES = 2
MAXKMERLENGTH = 31

Thu Apr 17 13:20:58 2014
 /srv/whitlam/home/users/uqbwoodc/git/bioruby-velvet_underground/ext/src/velvetg Assem
Version 1.2.10
Copyright 2007, 2008 Daniel Zerbino (zerbino@ebi.ac.uk)
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
Compilation settings:
CATEGORIES = 2
MAXKMERLENGTH = 31

Final graph has 4 nodes and n50 of 224, max 228, total 519, using 0/5 reads
Thu Apr 17 13:21:17 2014
 /srv/whitlam/home/users/uqbwoodc/git/bioruby-velvet_underground/ext/src/velveth Assem 31 -short -fasta Sequences -read_trkg yes
Version 1.2.10
Copyright 2007, 2008 Daniel Zerbino (zerbino@ebi.ac.uk)
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
Compilation settings:
CATEGORIES = 2
MAXKMERLENGTH = 31

Thu Apr 17 13:21:53 2014
 /srv/whitlam/home/users/uqbwoodc/git/bioruby-velvet_underground/ext/src/velvetg Assem -read_trkg yes
Version 1.2.10
Copyright 2007, 2008 Daniel Zerbino (zerbino@ebi.ac.uk)
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
Compilation settings:
CATEGORIES = 2
MAXKMERLENGTH = 31

Final graph has 4 nodes and n50 of 224, max 228, total 519, using 5/5 reads

Version data entries

5 entries across 5 versions & 1 rubygems

Version Path
bio-velvet_underground-0.3.1 spec/data/3/Assem/Log
bio-velvet_underground-0.3.0 spec/data/3/Assem/Log
bio-velvet_underground-0.2.1 spec/data/3/Assem/Log
bio-velvet_underground-0.2.0 spec/data/3/Assem/Log
bio-velvet_underground-0.1.0 spec/data/3/Assem/Log